# Microorganisms and functional genes in an aerobic-anoxic integrated gold mine wastewater treatment system

**Authors:** Getnet Belay, Carolina Suarez, Addis Simachew, Catherine J. Paul

PMC · DOI: 10.1007/s11274-026-04903-3 · World Journal of Microbiology & Biotechnology · 2026-03-27

## TL;DR

This study explores how microbes from Lake Chitu help treat cyanide-contaminated gold mine wastewater using aerobic-anoxic reactors.

## Contribution

The study identifies diverse microorganisms and their functional genes involved in cyanide degradation and heavy metal resistance from an alkaline soda lake.

## Key findings

- 23 non-redundant genomes were identified, including 14 isolates and 19 MAGs.
- Most isolates had genes for cyanide or cyanate transformation and oxygenases.
- Three Halomonas isolates had full denitrification genes and heavy metal resistance clusters.

## Abstract

Biological treatment of cyanide-contaminated wastewater is mediated by microbial consortia in which different organisms perform distinct, functionally specialized roles. This study investigated microbial communities involved in gold mine wastewater treatment with integrated aerobic-anoxic reactors seeded with consortia from an alkaline soda lake, Lake Chitu. Whole-genome sequencing of isolates (WGS) and metagenomic sequencing of the bioreactor were performed to characterize the consortia, resulting in the identification of 23 non-redundant genomes, comprising 14 whole-genome sequencing isolates and 19 metagenome-assembled genomes (MAGs). Most isolated genomes were similar to the recovered metagenomes of MAGs. Except for Alkalibacterium, all isolates possessed one or more genes potentially involved in cyanide or cyanate transformation, along with at least one type of terminal oxygenase; however, the gene encoding cynD, which is required for the direct hydrolysis of free cyanide (CN⁻), was not detected. Three representative Halomonas isolates harboured the nitrate reductase narGHI, nitrite reductase nirS, nitric oxide reductase norB/norC, and nitrous-oxide reductase nosZ genes for full denitrification. All of the isolates possessed several gene clusters associated with different heavy metal resistances. This study suggests that the microbial inoculum sourced from Lake Chitu harbors diverse microorganisms possessing genes potentially involved in cyanide-related metabolic pathways. The findings of this study add to our understanding of the alkaliphilic microbial population that degrades cyanide and cyanide intermediates and provide insight into how these organisms break down cyanide and resist cyanide and heavy metal inhibitory effects.

## Linked entities

- **Genes:** nirS (nitrite reductase) [NCBI Gene 882217], norB (nitric oxide reductase subunit B) [NCBI Gene 882193], norC (nitric oxide reductase subunit C) [NCBI Gene 882200], nosZ (nitrous-oxide reductase) [NCBI Gene 879824]
- **Chemicals:** cyanide (PubChem CID 5975), cyanate (PubChem CID 105034), nitrate (PubChem CID 943), nitrite (PubChem CID 946), nitric oxide (PubChem CID 145068), nitrous oxide (PubChem CID 948)
- **Species:** Alkalibacterium (taxon 99906), Halomonas (taxon 2745)

## Full-text entities

- **Genes:** Carbon-nitrogen hydrolase [NCBI Gene 13877395]
- **Diseases:** toxicity (MESH:D064420), cyanide poisoning (MESH:D011041)
- **Chemicals:** oxygen (MESH:D010100), mercury (MESH:D008628), carbon (MESH:D002244), KCl (MESH:D011189), Heavy metal (MESH:D019216), CuSO4 (MESH:D019327), carboxylic acid (MESH:D002264), Cr (MESH:D002857), arsenite (MESH:C015001), thiocyanate (MESH:C031760), nitrate (MESH:D009566), Cd (MESH:D002104), Ni (MESH:D009532), 2H2O (-), Zn (MESH:D015032), nitrite (MESH:D009573), amide (MESH:D000577), nitrogen compounds (MESH:D017672), ZnSO4 (MESH:D019287), glycerol (MESH:D005990), CaCl2 (MESH:D002122), Gold (MESH:D006046), agar (MESH:D000362), polyethersulfone (MESH:C022840), thiosulfate (MESH:D013885), iron (MESH:D007501), arsenic (MESH:D001151), ammonium (MESH:D064751), arsenate (MESH:C025657), NaCN (MESH:D012966), NiCl2 (MESH:C022838), Na2CO3 (MESH:C005686), Pb (MESH:D007854), Cyanide (MESH:D003486), NaNO3 (MESH:C031618), FeCl3 (MESH:C024555), NaNO2 (MESH:D012977), H2O (MESH:D014867), P (MESH:D010758), Copper (MESH:D003300), formate (MESH:C030544), acetate (MESH:D000085), cyanate (MESH:D003485), NaCl (MESH:D012965), nitrogen (MESH:D009584), formamide (MESH:C031066), CoCl2 (MESH:C018021), Ammonia (MESH:D000641), metal (MESH:D008670)
- **Species:** Bacteria Latreille et al. 1825 (Bacteria stick insect, genus) [taxon 629395], Vreelandella stevensii (species) [taxon 502821], Alkalibacterium kapii (species) [taxon 426704], Alkalibacterium putridalgicola (species) [taxon 426703], Alkalibacterium thalassium (species) [taxon 426701], Acinetobacter (genus) [taxon 469], Aliidiomarina (genus) [taxon 1249554], Actinotalea (genus) [taxon 458839], Homo sapiens (human, species) [taxon 9606], Alcaligenes faecalis (species) [taxon 511], Arthrobacter (genus) [taxon 1663], Thiobacillus (genus) [taxon 919], Serratia (genus) [taxon 613], Klebsiella (genus) [taxon 570], Halomonas sp. (species) [taxon 1486246], Alkalibacterium (genus) [taxon 99906], Pseudomonas aeruginosa (species) [taxon 287], Pseudomonas pseudoalcaligenes [taxon 330], Salisediminibacterium (genus) [taxon 1434042], Burkholderia (genus) [taxon 32008], Corynebacterium (genus) [taxon 1716], Azotobacter vinelandii (species) [taxon 354], Rhodococcus (genus) [taxon 1661425], Agrobacterium (genus) [taxon 357], Escherichia coli (E. coli, species) [taxon 562], Bacillus subtilis (species) [taxon 1423]
- **Cell lines:** P-DN-R2 — Homo sapiens (Human), Combined oxidative phosphorylation deficiency 33, Induced pluripotent stem cell (CVCL_ZB27)

## Full text

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## References

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Source: https://tomesphere.com/paper/PMC13021748