# Molecular mechanisms and therapeutic strategies: DNA methylation in pancreatic cancer

**Authors:** Junlin Liu, Junhua Xie, Yunyu Ding

PMC · DOI: 10.1080/15384047.2026.2644667 · Cancer Biology & Therapy · 2026-03-25

## TL;DR

This review explores how DNA methylation changes contribute to pancreatic cancer and how they might be used for early detection and treatment.

## Contribution

The paper highlights DNA methylation as a potential therapeutic target and biomarker in pancreatic cancer.

## Key findings

- Pancreatic cancer shows hypermethylation of tumor suppressor genes and hypomethylation at specific loci.
- Methylation-based biomarkers may aid in early detection and prognosis.
- DNA methyltransferase inhibitors show promise in preclinical and early clinical studies.

## Abstract

This narrative review examines DNA methylation dysregulation in pancreatic cancer, focusing on its mechanistic roles in tumorigenesis and applications in biomarkers and therapies.

We analyzed experimental and clinical studies on aberrant DNA methylation patterns, emphasizing their links to invasion, metastasis, therapy resistance, and immune modulation.

Pancreatic cancer exhibits recurrent tumor suppressor gene hypermethylation and locus-specific hypomethylation, driving progression and resistance. Methylation-based biomarkers (tissue/cfDNA) show promise for early detection and prognostication, though evidence remains largely retrospective or preclinical.

DNA methyltransferase inhibitors, alone or combined with immunotherapy/targeted agents, demonstrate preclinical and early clinical efficacy. Key challenges include mechanistic gaps, tumor heterogeneity, and assay standardization.

DNA methylation is a actionable regulatory layer in pancreatic cancer, but further mechanistic and clinical validation is needed for translational impact.

## Linked entities

- **Diseases:** pancreatic cancer (MONDO:0005192)

## Full-text entities

- **Genes:** BMP3 (bone morphogenetic protein 3) [NCBI Gene 651] {aka BMP-3A}, Pdcd1 (programmed cell death 1) [NCBI Gene 18566] {aka Ly101, PD-1, Pdc1}, OTUD4 (OTU deubiquitinase 4) [NCBI Gene 54726] {aka DUBA6, HIN1, HSHIN1}, C12orf42 (chromosome 12 open reading frame 42) [NCBI Gene 374470], HNF4A (hepatocyte nuclear factor 4 alpha) [NCBI Gene 3172] {aka FRTS4, HNF4, HNF4a7, HNF4a8, HNF4a9, HNF4alpha}, MIR21 (microRNA 21) [NCBI Gene 406991] {aka MIRN21, hsa-mir-21, miR-21, miRNA21}, CLDN1 (claudin 1) [NCBI Gene 9076] {aka CLD1, ILVASC, SEMP1}, S100P (S100 calcium binding protein P) [NCBI Gene 6286] {aka MIG9}, FEZ2 (fasciculation and elongation protein zeta 2) [NCBI Gene 9637] {aka HUM3CL}, DACT2 (dishevelled binding antagonist of beta catenin 2) [NCBI Gene 168002] {aka C6orf116, DAPPER2, DPR2, bA503C24.7}, CDKN2B (cyclin dependent kinase inhibitor 2B) [NCBI Gene 1030] {aka CDK4I, INK4B, MTS2, P15, TP15, p15INK4b}, BRCA2 (BRCA2 DNA repair associated) [NCBI Gene 675] {aka BRCC2, BROVCA2, FACD, FAD, FAD1, FANCD}, TET1 (tet methylcytosine dioxygenase 1) [NCBI Gene 80312] {aka CXXC6, LCX, bA119F7.1}, APC (APC regulator of Wnt signaling pathway) [NCBI Gene 324] {aka BTPS2, DESMD, DP2, DP2.5, DP3, GS}, CTNNB1 (catenin beta 1) [NCBI Gene 1499] {aka CTNNB, EVR7, MRD19, NEDSDV, armadillo}, PUM1 (pumilio RNA binding family member 1) [NCBI Gene 9698] {aka HSPUM, NEDMSF, PUMH, PUMH1, PUML1, SCA47}, ITGA2 (integrin subunit alpha 2) [NCBI Gene 3673] {aka BR, CD49B, FMAIT3, GPIa, HPA-5, VLA-2}, SLTM (SAFB like transcription modulator) [NCBI Gene 79811] {aka Met}, RASSF1 (Ras association domain family member 1) [NCBI Gene 11186] {aka 123F2, NORE2A, RASSF1A, RDA32, REH3P21}, DNMT3B (DNA methyltransferase 3 beta) [NCBI Gene 1789] {aka FSHD4, ICF, ICF1, M.HsaIIIB}, MYEOV (myeloma overexpressed) [NCBI Gene 26579] {aka OCIM}, HDAC9 (histone deacetylase 9) [NCBI Gene 9734] {aka HD7, HD7b, HD9, HDAC, HDAC7B, HDAC9B}, BRCA1 (BRCA1 DNA repair associated) [NCBI Gene 672] {aka BRCAI, BRCC1, BROVCA1, FANCS, IRIS, PNCA4}, TDG (thymine DNA glycosylase) [NCBI Gene 6996] {aka hTDG}, NPTX2 (neuronal pentraxin 2) [NCBI Gene 4885] {aka NARP, NP-II, NP2}, HES1 (hes family bHLH transcription factor 1) [NCBI Gene 3280] {aka HES-1, HHL, HRY, bHLHb39}, CDH1 (cadherin 1) [NCBI Gene 999] {aka Arc-1, BCDS1, CD324, CDHE, ECAD, LCAM}, HLA-C (major histocompatibility complex, class I, C) [NCBI Gene 3107] {aka D6S204, HLA-JY3, HLAC, HLC-C, MHC, PSORS1}, Dnmt1 (DNA methyltransferase 1) [NCBI Gene 13433] {aka Cxxc9, Dnmt, Dnmt1o, MCMT, MTase, Met-1}, PIK3CB (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta) [NCBI Gene 5291] {aka P110BETA, PI3K, PI3KBETA, PIK3C1}, RIGI (RNA sensor RIG-I) [NCBI Gene 23586] {aka DDX58, RIG-I, RIG1, RLR-1, SGMRT2}, IRX4 (iroquois homeobox 4) [NCBI Gene 50805] {aka IRXA3}, PARP1 (poly(ADP-ribose) polymerase 1) [NCBI Gene 142] {aka ADPRT, ADPRT 1, ADPRT1, ARTD1, PARP, PARP-1}, Ehmt2 (euchromatic histone lysine N-methyltransferase 2) [NCBI Gene 110147] {aka Bat8, D17Ertd710e, G9a, KMT1C, NG36}, POU2F2 (POU class 2 homeobox 2) [NCBI Gene 5452] {aka OCT2, OTF2, Oct-2}, AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207] {aka AKT, PKB, PKB-ALPHA, PRKBA, RAC, RAC-ALPHA}, EYA2 (EYA transcriptional coactivator and phosphatase 2) [NCBI Gene 2139] {aka EAB1}, DIRAS3 (DIRAS family GTPase 3) [NCBI Gene 9077] {aka ARHI, NOEY2}, GSX2 (GS homeobox 2) [NCBI Gene 170825] {aka DMJDS2, GSH2}, RAD51C (RAD51 paralog C) [NCBI Gene 5889] {aka BROVCA3, FANCO, R51H3, RAD51L2}, LBH (LBH regulator of Wnt signaling pathway) [NCBI Gene 81606], TWIST1 (twist family bHLH transcription factor 1) [NCBI Gene 7291] {aka ACS3, BPES2, BPES3, CRS, CRS1, CSO}, NKD2 (NKD inhibitor of Wnt signaling pathway 2) [NCBI Gene 85409] {aka Naked2}, PHGDH (phosphoglycerate dehydrogenase) [NCBI Gene 26227] {aka 3-PGDH, 3PGDH, HEL-S-113, NLS, NLS1, PDG}, CDKN2A (cyclin dependent kinase inhibitor 2A) [NCBI Gene 1029] {aka ARF, CAI2, CDK4I, CDKN2, CMM2, INK4}, SERPINB5 (serpin family B member 5) [NCBI Gene 5268] {aka PI5, maspin}, FAM110C (family with sequence similarity 110 member C) [NCBI Gene 642273], Cd274 (CD274 antigen) [NCBI Gene 60533] {aka A530045L16Rik, B7h1, Pdcd1l1, Pdcd1lg1, Pdl1}, SPARC (secreted protein acidic and cysteine rich) [NCBI Gene 6678] {aka BM-40, OI17, ON, ONT}, SOX17 (SRY-box transcription factor 17) [NCBI Gene 64321] {aka PPH7, VUR3}, SFRP1 (secreted frizzled related protein 1) [NCBI Gene 6422] {aka FRP, FRP-1, FRP1, FrzA, SARP2}, DNMT1 (DNA methyltransferase 1) [NCBI Gene 1786] {aka ADCADN, AIM, CXXC9, DNMT, HSN1E, MCMT}, ZFP82 (ZFP82 zinc finger protein) [NCBI Gene 284406] {aka ZNF545}, Tgfb1 (transforming growth factor, beta 1) [NCBI Gene 21803] {aka TGF-beta1, TGFbeta1, Tgfb, Tgfb-1}, IFNA1 (interferon alpha 1) [NCBI Gene 3439] {aka IFL, IFN, IFN-ALPHA, IFN-alphaD, IFNA13, IFNA@}, LHX6 (LIM homeobox 6) [NCBI Gene 26468] {aka LHX6.1, hLHX6}, IFIH1 (interferon induced with helicase C domain 1) [NCBI Gene 64135] {aka AGS7, Hlcd, IDDM19, IMD95, MDA-5, MDA5}, Cd4 (CD4 antigen) [NCBI Gene 12504] {aka L3T4, Ly-4}, SOX9 (SRY-box transcription factor 9) [NCBI Gene 6662] {aka CMD1, CMPD1, ENH13, SRA1, SRXX2, SRXY10}, KRAS (KRAS proto-oncogene, GTPase) [NCBI Gene 3845] {aka 'C-K-RAS, C-K-RAS, CFC2, K-RAS2A, K-RAS2B, K-RAS4A}
- **Diseases:** Chronic inflammation (MESH:D007249), hematologic malignancies (MESH:D019337), Pancreatic Cancer (MESH:D010190), solid (MESH:D018250), pancreatic tumorigenesis (MESH:D010195), hypoxic (MESH:D002534), cytotoxic (MESH:D064420), chronic pancreatitis (MESH:D050500), malignancies (MESH:D009369), pancreatic carcinogenesis (MESH:D063646), metastasis (MESH:D009362), benign disease (MESH:D004194), PDAC (MESH:D021441), viral infection (MESH:D014777)
- **Chemicals:** olaparib (MESH:C531550), glucose (MESH:D005947), niraparib (MESH:C545685), emodin (MESH:D004642), N6-methyladenosine (MESH:C010223), N6-methyladenine (MESH:C005955), cytidine (MESH:D003562), oxaliplatin (MESH:D000077150), cytosine (MESH:D003596), 5-methylcytosine (MESH:D044503), 5-carboxylcytosine (MESH:C560974), SGI-1027 (MESH:C581203), amino acid (MESH:D000596), 5-hydroxymethylcytosine (MESH:C011865), 5-AZA (MESH:D001374), 5-aza-2'-deoxycytidine (MESH:D000077209), paraffin (MESH:D010232), 5 mC (-), ROS (MESH:D017382), 5-formylcytosine (MESH:C560973), zebularine (MESH:C009131), formalin (MESH:D005557)
- **Species:** Homo sapiens (human, species) [taxon 9606], Erysiphe sp. RV (species) [taxon 662690], Mus musculus (house mouse, species) [taxon 10090]

## Full text

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## Figures

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## References

140 references — full list in the complete paper: https://tomesphere.com/paper/PMC13020873/full.md

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Source: https://tomesphere.com/paper/PMC13020873