# Photocaged FLP recombinase for precise spatio-temporal control of gene expression

**Authors:** Jose Javier Vazquez Rodriguez, Kieran Baxter, Yunchuan Ma, Sebastian Greiss

PMC · DOI: 10.1093/nar/gkag257 · 2026-03-26

## TL;DR

Researchers created a light-controlled FLP recombinase to precisely turn on gene expression in specific cells of C. elegans using short laser pulses.

## Contribution

A photocaged FLP recombinase was developed for spatio-temporal gene control in multicellular organisms.

## Key findings

- Photocaged FLP has no background activity and can be activated with nearly 100% efficiency using light.
- The photocaged FLP can be activated with a 405 nm laser for cell-specific gene expression in C. elegans.
- The tool is compatible with imaging and optogenetics wavelengths and requires <10 ms illumination per cell.

## Abstract

The ability to precisely control gene expression is fundamental to studying biological processes. Using site-specific recombinases such as FLP, gene expression can be controlled, albeit with limited spatio-temporal precision. We develop a photocaged FLP recombinase, which can be precisely controlled using light, and we demonstrate its efficacy in Caenorhabditis elegans. We use genetic code expansion to incorporate photocaged amino acids into FLP, replacing critical residues in the active site with their photocaged counterparts. Photocaged FLP displays no detectable background activity, and brief illumination can be used to activate FLP with near 100% efficiency. We show that photocaged FLP can be activated by light between 365 and 435 nm, and that it is not activated by light above 450 nm, making it fully compatible with wavelengths commonly used for imaging and optogenetics. Furthermore, we demonstrate that photocaged FLP can be used to switch on expression of target genes in individual cells within the animal using a standard 405 nm microscope-mounted laser to deliver the activating light. Activation by laser requires illumination times of <10 ms per cell. Thus, we have developed a straightforward and efficient tool to precisely control gene expression in the multicellular organism C. elegans.

Graphical Abstract

## Linked entities

- **Species:** Caenorhabditis elegans (taxon 6239)

## Full-text entities

- **Genes:** TRNG (tRNA-Gly) [NCBI Gene 4563] {aka MTTG}, SFRP4 (secreted frizzled related protein 4) [NCBI Gene 6424] {aka FRP-4, FRPHE, FRZB-2, PYL, sFRP-4}, hsp-16.41 (Heat shock protein Hsp-16.41) [NCBI Gene 178660], myo-2 (Myosin-2) [NCBI Gene 181404], myo-3 (Myosin-3) [NCBI Gene 179676], egl-13 (HMG box domain-containing protein;Transcription factor egl-13) [NCBI Gene 180833], glr-1 (Glutamate receptor 1) [NCBI Gene 176204], maco-1 (Macoilin) [NCBI Gene 183963], PC (pyruvate carboxylase) [NCBI Gene 5091] {aka PCB}, C29F7.t1 (tRNA-Ile) [NCBI Gene 183018]
- **Diseases:** Epilepsy (MESH:D004827)
- **Chemicals:** tamoxifen (MESH:D013629), oligonucleotides (MESH:D009841), HCl (MESH:D006851), hygromycin (MESH:C026273), agar (MESH:D000362), Tyr (MESH:D014443), NaOH (MESH:D012972), hygromycin B (MESH:D006921), potassium phosphate (MESH:C013216), Cre (-), NaN3 (MESH:D019810), PC (MESH:C053518), Lys (MESH:D008239), ATR (MESH:D012172), acid (MESH:D000143), amino acids (MESH:D000596), Cys (MESH:D003545), Triton-X100 (MESH:D017830)
- **Species:** Escherichia coli (E. coli, species) [taxon 562], Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932], Homo sapiens (human, species) [taxon 9606], C. elegans [taxon 328850], Drosophila melanogaster (fruit fly, species) [taxon 7227], Methanosarcina mazei (species) [taxon 2209], Mus musculus (house mouse, species) [taxon 10090], Caenorhabditis elegans (species) [taxon 6239], Petrachloros mirabilis (species) [taxon 2918835], Danio rerio (leopard danio, species) [taxon 7955]

## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC13019310/full.md

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Source: https://tomesphere.com/paper/PMC13019310