# Therapeutic manipulation and spatial quantification of the tumor microenvironment in colorectal cancer

**Authors:** Eoghan J. Mulholland-Illingworth, Joshua W. Moore, Muyang Lin, Raheleh Amirkhah, Lucile Grzesiak, Amelia Ligeza, Joshua A. Bull, Joseph Boen, Gabriel N. Valbuena, Michael A. Gillespie, Tamsin R.M. Lannagan, Kathryn Gilroy, Megan L. Mills, Shania M. Corry, Rachel A. Ridgway, Hayley L. Belnoue-Davis, Philip D. Dunne, Owen J. Sansom, Helen M. Byrne, Simon J. Leedham

PMC · DOI: 10.1016/j.isci.2026.115193 · 2026-02-28

## TL;DR

The study identifies two main types of cancer-associated fibroblasts in colorectal cancer and shows how targeting TGFβ signaling can reshape the tumor environment to improve immune response.

## Contribution

A simplified framework for CAF classification and a method to measure therapeutic response through spatial metrics in CRC.

## Key findings

- TGFβ signaling drives transitions between PDGFRA+ and ACTA2+ fibroblast states.
- ALK5 inhibition shifts CAF composition and enhances T-cell presence.
- Multiscale spatial analysis detects stromal drug response without tumor shrinkage.

## Abstract

Colorectal cancer (CRC) is a complex ecosystem shaped by bidirectional interactions between epithelium and the tumor microenvironment, prominently mediated by TGFβ signaling. Cancer-associated fibroblasts (CAFs) are regulators of epithelial plasticity and immune cell recruitment; yet, their diversity has impacted translationally applicable spatial analysis. Here, we distil the fibroblast continuum into two overarching CAF populations that are largely transcriptomically distinct and are marked by PDGFRA+ and ACTA2+ expression, enabling robust spatial identification using single immunohistochemical markers. We show that TGFβ signaling drives dynamic transitions between these states. In a preclinical model, selective ALK5 inhibition remodels CAF composition in vivo, reconfiguring local immune neighborhoods and indirectly altering epithelial stem cell states. Finally, we demonstrate that multiscale spatial analysis provides a quantitative readout of stromal-immune-epithelial remodeling following therapy. These findings establish a simplified, translationally relevant CAF framework and highlight spatially resolved stromal dynamics as measurable indicators of therapeutic response in CRC.

•TGF-β drives transitions between PDGFRA+ and ACTA2+ fibroblast phenotypic states•ALK5 inhibition depletes ACTA2+ CAFs and expands PDGFRA+ fibroblasts•Fibroblast remodeling shifts neutrophil niches to T-cell-enriched niches•Multiscale spatial metrics detect stromal drug response without tumor shrinkage

TGF-β drives transitions between PDGFRA+ and ACTA2+ fibroblast phenotypic states

ALK5 inhibition depletes ACTA2+ CAFs and expands PDGFRA+ fibroblasts

Fibroblast remodeling shifts neutrophil niches to T-cell-enriched niches

Multiscale spatial metrics detect stromal drug response without tumor shrinkage

Health sciences; medicine; oncology; cancer

## Linked entities

- **Genes:** TGFB1 (transforming growth factor beta 1) [NCBI Gene 7040], PDGFRA (platelet derived growth factor receptor alpha) [NCBI Gene 5156], ACTA2 (actin alpha 2, smooth muscle) [NCBI Gene 59], TGFBR1 (transforming growth factor beta receptor 1) [NCBI Gene 7046]
- **Diseases:** colorectal cancer (MONDO:0005575), CRC (MONDO:0005575)

## Full-text entities

- **Genes:** ACTA2 (actin alpha 2, smooth muscle) [NCBI Gene 59] {aka ACTSA, SMDYS}, PDGFRA (platelet derived growth factor receptor alpha) [NCBI Gene 5156] {aka CD140A, PDGFR-2, PDGFR2}, TGFB1 (transforming growth factor beta 1) [NCBI Gene 7040] {aka CAEND1, CED, DPD1, IBDIMDE, LAP, TGF-beta1}, TGFBR1 (transforming growth factor beta receptor 1) [NCBI Gene 7046] {aka AAT5, ACVRLK4, ALK-5, ALK5, ESS1, LDS1}
- **Diseases:** Cancer (MESH:D009369), CRC (MESH:D015179)

## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC13018967/full.md

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Source: https://tomesphere.com/paper/PMC13018967