# Genomic landscape of pleural mesothelioma in Japanese patients: A comprehensive analysis using nationwide database

**Authors:** Hirokazu Taniguchi, Kazumasa Akagi, Takahito Fukuda, Takuya Honda, Hirokazu Kurohama, Nozomi Ueki, Yuki Matsuoka, Emiko Udo, Saya Yahata, Shoko Miura, Hiromi Tomono, Noritaka Honda, Yosuke Dotsu, Midori Matsuo, Shinnosuke Takemoto, Izumi Sato, Shinji Okano, Masahiro Nakashima, Hiroshi Mukae, Kazuto Ashizawa

PMC · DOI: 10.1016/j.tranon.2026.102731 · 2026-03-18

## TL;DR

This study analyzes the genomic profiles of Japanese pleural mesothelioma patients to identify genetic alterations and potential biomarkers for prognosis and treatment.

## Contribution

The first large-scale genomic characterization of Japanese pleural mesothelioma patients using a nationwide database.

## Key findings

- Frequent genetic alterations in BAP1, NF2, TP53, CDKN2A/B, and MTAP were identified.
- High TMB and TP53 alterations were linked to poor prognosis.
- Immune checkpoint inhibitors improved overall survival in patients.

## Abstract

•Large-scale genomic profiling of Japanese patients with pleural mesothelioma.•Frequent alterations identified in BAP1, NF2, TP53, CDKN2A/B, and MTAP.•High TMB and TP53 alterations were associated with poor prognosis.•Immune checkpoint inhibitor treatment improved overall survival.

Large-scale genomic profiling of Japanese patients with pleural mesothelioma.

Frequent alterations identified in BAP1, NF2, TP53, CDKN2A/B, and MTAP.

High TMB and TP53 alterations were associated with poor prognosis.

Immune checkpoint inhibitor treatment improved overall survival.

Pleural mesothelioma (PM) is a rare and aggressive malignancy. The development of novel therapeutic strategies targeting PM remains an unmet clinical need. However, comprehensive genomic data from Asian populations, particularly from Japanese patients, are limited. This study aimed to elucidate the genomic landscape of PM in Japanese patients using the nationwide Center for Cancer Genomics and Advanced Therapeutics (C-CAT) genomic database. A total of 211 patients registered between June 2019 and March 2025 were analyzed. The most frequent genetic alterations were in BAP1, NF2, TP53, CDKN2A/B, and MTAP. The median tumor mutation burden (TMB) was 1.26, and no microsatellite instability–high patients were detected. The median overall survival (OS) after first-line treatment was 30.6 months. Patients treated with immune checkpoint inhibitors (ICIs) had a significantly better OS than those who did not receive ICIs. In univariate and multivariate analyses, TP53 alterations and high TMB (cutoff value of 1.6) were associated with poor prognosis. These results suggest that integrating clinical and genomic data can enhance prognostic stratification and contribute to the development of precision medicine for PM. This study provides the first large-scale genomic characterization of Japanese PM patients with C-CAT and highlights potential biomarkers for future therapeutic development.

## Linked entities

- **Genes:** BAP1 (BRCA1 associated deubiquitinase 1) [NCBI Gene 8314], NF2 (NF2, moesin-ezrin-radixin like (MERLIN) tumor suppressor) [NCBI Gene 4771], TP53 (tumor protein p53) [NCBI Gene 7157], cdkn2a/b (cyclin-dependent kinase inhibitor 2A/B (p15, inhibits CDK4)) [NCBI Gene 100329528], MTAP (methylthioadenosine phosphorylase) [NCBI Gene 4507]
- **Diseases:** pleural mesothelioma (MONDO:0003308)

## Full-text entities

- **Genes:** TP53 (tumor protein p53) [NCBI Gene 7157] {aka BCC7, BMFS5, LFS1, P53, TRP53}, NOTCH3 (notch receptor 3) [NCBI Gene 4854] {aka CADASIL, CADASIL1, CARASIL1, CASIL, FPLD1, IMF2}, GDNF (glial cell derived neurotrophic factor) [NCBI Gene 2668] {aka ATF, ATF1, ATF2, HFB1-GDNF, HSCR3}, NF2 (NF2, moesin-ezrin-radixin like (MERLIN) tumor suppressor) [NCBI Gene 4771] {aka ACN, BANF, SCH, SWNV, merlin-1}, TEK (TEK receptor tyrosine kinase) [NCBI Gene 7010] {aka CD202B, GLC3E, TIE-2, TIE2, VMCM, VMCM1}, EWSR1 (EWS RNA binding protein 1) [NCBI Gene 2130] {aka EWS, EWS-FLI1}, EGFR (epidermal growth factor receptor) [NCBI Gene 1956] {aka ERBB, ERBB1, ERRP, HER1, NISBD2, NNCIS}, BRAF (B-Raf proto-oncogene, serine/threonine kinase) [NCBI Gene 673] {aka B-RAF1, B-raf, BRAF-1, BRAF1, NS7, RAFB1}, KRAS (KRAS proto-oncogene, GTPase) [NCBI Gene 3845] {aka 'C-K-RAS, C-K-RAS, CFC2, K-RAS2A, K-RAS2B, K-RAS4A}, CDKN2A (cyclin dependent kinase inhibitor 2A) [NCBI Gene 1029] {aka ARF, CAI2, CDK4I, CDKN2, CMM2, INK4}, SMAD4 (SMAD family member 4) [NCBI Gene 4089] {aka DPC4, JIP, MADH4, MYHRS}, CDKN2B (cyclin dependent kinase inhibitor 2B) [NCBI Gene 1030] {aka CDK4I, INK4B, MTS2, P15, TP15, p15INK4b}, MST1R (macrophage stimulating 1 receptor) [NCBI Gene 4486] {aka CD136, CDw136, NPCA3, PTK8, RON, SEA}, LTK (leukocyte receptor tyrosine kinase) [NCBI Gene 4058] {aka TYK1}, MTAP (methylthioadenosine phosphorylase) [NCBI Gene 4507] {aka BDMF, DMSFH, DMSMFH, HEL-249, LGMBF, MSAP}, STK11 (serine/threonine kinase 11) [NCBI Gene 6794] {aka LKB1, PJS, hLKB1}, BAP1 (BRCA1 associated deubiquitinase 1) [NCBI Gene 8314] {aka HUCEP-13, KURIS, TPDS1, UBM2, UCHL2, UVM2}
- **Diseases:** non-small-cell lung cancer (MESH:D002289), CGP (MESH:D001308), epithelioid (MESH:D012509), pleural (MESH:D010995), leukemia (MESH:D007938), peritoneal mesothelioma (MESH:D010538), sarcomatoid (MESH:D002292), mesothelioma (MESH:D008654), genomic abnormalities (MESH:D042822), desmoplastic (MESH:D018220), breast, colorectal, lung, renal, and endometrial cancers (MESH:C537243), PM (MESH:D000086002), C-CAT (MESH:D009369)
- **Chemicals:** platinum (MESH:D010984), Asbestos (MESH:D001194), NIVO (MESH:D000077594), cisplatin (MESH:D002945), ipilimumab (MESH:D000074324), CDx (-), pemetrexed (MESH:D000068437), pembrolizumab (MESH:C582435), formalin (MESH:D005557), paraffin (MESH:D010232), atezolizumab (MESH:C000594389)
- **Species:** Homo sapiens (human, species) [taxon 9606]
- **Cell lines:** S2 — Drosophila melanogaster (Fruit fly), Spontaneously immortalized cell line (CVCL_Z232)

## Figures

5 figures with captions in the complete paper: https://tomesphere.com/paper/PMC13018873/full.md

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Source: https://tomesphere.com/paper/PMC13018873