# Berberine signature and cardiometabolic diseases using randomized controlled trial, cohort study and Mendelian randomization

**Authors:** Jie V. Zhao, Vishal Sarsani, Bing Chen, Huan Yun, Jie Hu, Liming Liang

PMC · DOI: 10.1038/s44325-026-00113-w · 2026-03-25

## TL;DR

This study explores how berberine affects heart and metabolic diseases using clinical trials and genetic data, finding potential protective effects.

## Contribution

A novel berberine response signature was developed and linked to reduced risks of ischemic heart disease and diabetes.

## Key findings

- The berberine signature was associated with lower ischemic heart disease risk (OR 0.85) and diabetes risk (OR 0.88) using Mendelian randomization.
- SHBG and PRSS2 may explain the protective effect on heart disease, while testosterone and other proteins may relate to diabetes risk reduction.

## Abstract

Berberine lowers both lipids and glucose, yet its role on cardiometabolic disease risk remain unclear. Based on a randomized controlled trial of berberine (registered in ClinicalTrials.gov on Dec 2018, NCT03770325), leveraging proteomics and sex hormones data, we built a signature reflecting response to berberine using elastic net regression. We then assessed its associations with ischemic heart disease (IHD) and diabetes in UK Biobank using logistic regression and for causal relationship, using bi-directional Mendelian randomization (MR), and estimates of each protein/hormone. The signature was related to lower IHD and diabetes risks (OR for IHD 0.85, 95% CI 0.79-0.91; diabetes 0.88, 0.80-0.96 using MR). SHBG and PRSS2 might explain the beneficial association with IHD; testosterone, SHBG, CCL5, CNDP1, F11, LCN2, and THBS4 might explain the association with diabetes, which provides insights for drug development. Our study suggests beneficial associations of berberine with IHD and diabetes, which requires confirmation in large clinical trials.

## Linked entities

- **Proteins:** SHBG (sex hormone binding globulin), PRSS2 (serine protease 2), CCL5 (C-C motif chemokine ligand 5), CNDP1 (carnosine dipeptidase 1), F11 (coagulation factor XI), LCN2 (lipocalin 2), THBS4 (thrombospondin 4)
- **Chemicals:** berberine (PubChem CID 2353)
- **Diseases:** ischemic heart disease (MONDO:0024644), diabetes (MONDO:0005015)

## Full-text entities

- **Genes:** CCL5 (C-C motif chemokine ligand 5) [NCBI Gene 6352] {aka D17S136E, RANTES, SCYA5, SIS-delta, SISd, TCP228}, PCSK9 (proprotein convertase subtilisin/kexin type 9) [NCBI Gene 255738] {aka FH3, FHCL3, HCHOLA3, LDLCQ1, NARC-1, NARC1}, REG1A (regenerating family member 1 alpha) [NCBI Gene 5967] {aka ICRF, P19, PSP, PSPS, PSPS1, PTP}, CA1 (carbonic anhydrase 1) [NCBI Gene 759] {aka CA-I, CAB, Car1, HEL-S-11}, FCN2 (ficolin 2) [NCBI Gene 2220] {aka EBP-37, FCNL, P35, ficolin-2}, TGFB1 (transforming growth factor beta 1) [NCBI Gene 7040] {aka CAEND1, CED, DPD1, IBDIMDE, LAP, TGF-beta1}, APOM (apolipoprotein M) [NCBI Gene 55937] {aka G3a, HSPC336, NG20, apo-M}, DEFA1 (defensin alpha 1) [NCBI Gene 1667] {aka DEF1, DEFA2, HNP-1, HP-1, HP1, MRS}, MBL2 (mannose binding lectin 2) [NCBI Gene 4153] {aka COLEC1, HSMBPC, MBL, MBL2D, MBP, MBP-C}, SHBG (sex hormone binding globulin) [NCBI Gene 6462] {aka ABP, SBP, TEBG}, F11 (coagulation factor XI) [NCBI Gene 2160] {aka FXI, PTA}, LTBP2 (latent transforming growth factor beta binding protein 2) [NCBI Gene 4053] {aka C14orf141, GLC3D, LTBP3, MSPKA, MSTP031, WMS3}, CD46 (CD46 molecule) [NCBI Gene 4179] {aka AHUS2, MCP, MIC10, TLX, TRA2.10}, THBS4 (thrombospondin 4) [NCBI Gene 7060] {aka TSP-4, TSP4}, SERPINA1 (serpin family A member 1) [NCBI Gene 5265] {aka A1A, A1AT, AAT, PI, PI1, PRO2275}, JMJD1C (jumonji domain containing 1C) [NCBI Gene 221037] {aka KDM3C, TRIP-8, TRIP8}, UGT1A (UDP glucuronosyltransferase family 1 member A complex locus) [NCBI Gene 7361] {aka GNT1, UGT, UGT1, UGT1A@}, F2 (coagulation factor II, thrombin) [NCBI Gene 2147] {aka PT, RPRGL2, THPH1}, CNDP1 (carnosine dipeptidase 1) [NCBI Gene 84735] {aka CN1, CPGL2, HsT2308}, PLA2G7 (phospholipase A2 group VII) [NCBI Gene 7941] {aka LDL-PLA2, LP-PLA2, PAFAD, PAFAH}, GCKR (glucokinase regulator) [NCBI Gene 2646] {aka FGQTL5, GKRP}, ZBTB4 (zinc finger and BTB domain containing 4) [NCBI Gene 57659] {aka KAISO-L1, ZNF903}, CHRDL1 (chordin like 1) [NCBI Gene 91851] {aka CHL, MGC1, MGCN, NRLN1, VOPT, dA141H5.1}, SMAD3 (SMAD family member 3) [NCBI Gene 4088] {aka HSPC193, HsT17436, JV15-2, LDS1C, LDS3, MADH3}, CA4 (carbonic anhydrase 4) [NCBI Gene 762] {aka CAIV, Car4, RP17}, LCN2 (lipocalin 2) [NCBI Gene 3934] {aka 24p3, MSFI, NGAL, p25}, PRSS2 (serine protease 2) [NCBI Gene 5645] {aka TRY2, TRY8, TRYP2}, TGFBR3 (transforming growth factor beta receptor 3) [NCBI Gene 7049] {aka BGCAN, betaglycan}
- **Diseases:** influenza (MESH:D007251), cardiometabolic disease (MESH:D024821), cardiovascular disease (MESH:D002318), liver/renal dysfunction (MESH:D008107), hyperglycemia (MESH:D006943), infectious diseases (MESH:D003141), familial hypercholesterolemia (MESH:D006938), congenital diseases (MESH:D030342), inflammation (MESH:D007249), DIAbetes (MESH:D003920), Atherosclerosis (MESH:D050197), IHD (MESH:D017202), MR (MESH:C562757), insulin resistance (MESH:D007333), Hyperlipidemia (MESH:D006949), diabetic nephropathy (MESH:D003928), death (MESH:D003643), type 2 diabetes (MESH:D003924), obesity (MESH:D009765), platelet aggregation (MESH:D001791), myalgia (MESH:D063806)
- **Chemicals:** Berberine (MESH:D001599), ezetimibe (MESH:D000069438), fibrates (MESH:D058607), testosterone (MESH:D013739), alcohol (MESH:D000438), glucose (MESH:D005947), Lipid (MESH:D008055), triglyceride (MESH:D014280), UKB-PPP (-), cholesterol (MESH:D002784), TG (MESH:D013866)
- **Species:** Homo sapiens (human, species) [taxon 9606]
- **Mutations:** rs5985544, rs780093, rs1260326
- **Cell lines:** HepG2 — Homo sapiens (Human), Hepatoblastoma, Cancer cell line (CVCL_0027)

## Figures

5 figures with captions in the complete paper: https://tomesphere.com/paper/PMC13018313/full.md

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Source: https://tomesphere.com/paper/PMC13018313