# Activation of l-histidine biosynthesis as a new antibiotic strategy against Mycobacterium tuberculosis

**Authors:** Debbie M. Hunt, João Pedro Pisco, Angela Rodgers, Cesira de Chiara, Anisha Zaveri, Kamila L. Pacholarz, Dimitrios Evangelopoulos, Acely Garza-Garcia, Sabine Ehrt, Dirk Schnappinger, Perdita E. Barran, Maximiliano G. Gutierrez, Luiz Pedro S. de Carvalho

PMC · DOI: 10.1038/s41467-026-70510-3 · 2026-03-21

## TL;DR

This paper introduces a new antibiotic strategy that kills tuberculosis bacteria by overactivating a biochemical pathway, causing energy and nutrient depletion.

## Contribution

The study demonstrates that activating, rather than inhibiting, a metabolic pathway can be an effective antimycobacterial strategy.

## Key findings

- Supraphysiological activation of L-histidine biosynthesis reduces M. tuberculosis growth in culture.
- Allosteric variants of ATP-PRT cause nutrient and energy depletion, leading to loss of bacterial fitness.
- Expression of these variants reduces M. tuberculosis infections in human macrophages and mice.

## Abstract

The increasing prevalence of antimicrobial resistance is an important challenge that warrants new approaches to antibiotic development. Currently, all antibiotics inhibit biological processes. To explore whether activation of a biochemical pathway can elicit bactericidal effects we engineered variants of Mycobacterium tuberculosis ATP-phosphoribosyltransferase (ATP-PRT) that are resistant to allosteric inhibition by l-histidine, leading to supraphysiological activation of ATP-PRT and l-histidine overproduction. Upregulation of L-histidine biosynthesis significantly reduces the growth of M. tuberculosis in culture and causes a loss of fitness owing to nutrient and energy depletion. Moreover, the expression of allosteric variants in M. tuberculosis significantly reduced infections in human macrophages and in a mouse model of infection. Thus, metabolic activation represents a new mycobactericidal mechanism that could be applied to antimycobacterial drug discovery.

Here, the authors report metabolic activation as a potential antimicrobial strategy against Mycobacterium tuberculosis. They show that supra-physiological activation of L-histidine biosynthesis reduces bacterial growth and causes loss of fitness due to nutrient and energy depletion.

## Linked entities

- **Proteins:** ATP-PRT1 (ATP phosphoribosyl transferase 1)
- **Chemicals:** l-histidine (PubChem CID 6274)
- **Diseases:** tuberculosis (MONDO:0018076)
- **Species:** Mycobacterium tuberculosis (taxon 1773), Homo sapiens (taxon 9606), Mus musculus (taxon 10090)

## Full-text entities

- **Genes:** IFNG (interferon gamma) [NCBI Gene 3458] {aka IFG, IFI, IMD69}, GNRHR (gonadotropin releasing hormone receptor) [NCBI Gene 2798] {aka GNRHR1, GRHR, HH7, LHRHR, LRHR}, CSF2 (colony stimulating factor 2) [NCBI Gene 1437] {aka CSF, GMCSF}, GLP1R (glucagon like peptide 1 receptor) [NCBI Gene 2740] {aka GLP-1, GLP-1-R, GLP-1R}, hisG [NCBI Gene 888689], CD14 (CD14 molecule) [NCBI Gene 929]
- **Diseases:** toxicity (MESH:D064420), deaths (MESH:D003643), M. tuberculosis infection (MESH:D014376), metabolic dysregulation (MESH:D021081), Infection (MESH:D007239), TB (MESH:D014390), MoA (MESH:D009207), macrophage (MESH:D055501)
- **Chemicals:** glycerol (MESH:D005990), Zirconia (MESH:C028541), EDTA (MESH:D004492), phosphoribosyl-ATP (MESH:C003130), K+ (MESH:D011188), CAPS (MESH:C097300), HEPES (MESH:D006531), Agar (MESH:D000362), gold (MESH:D006046), plecanatide (MESH:C584575), oxazolidinones (MESH:D023303), MgCl2 (MESH:D015636), SDS (MESH:D012967), EGT (MESH:D004880), GlutaMAX (MESH:C054122), codeine (MESH:D003061), tetracyclines (MESH:D013754), rifampin (MESH:D012293), carbon (MESH:D002244), triethanolamine (MESH:C009546), imidazole (MESH:C029899), bedaquiline (MESH:C493870), KCl (MESH:D011189), thiol (MESH:D013438), purine (MESH:C030985), Middlebrook 7H10 agar medium (-), Ser (MESH:D012694), water (MESH:D014867), silica (MESH:D012822), X-GAL (MESH:C044888), dextrose (MESH:D005947), NaCl (MESH:D012965), formic acid (MESH:C030544), oleic acid (MESH:D019301), KAN (MESH:D007612), sucrose (MESH:D013395), MOPS (MESH:C008550), lipopolysaccharide (MESH:D008070), -PRPP (MESH:D010754), ATP (MESH:D000255), mitapivat (MESH:C000634504), Tween (MESH:D011136), CO2 (MESH:D002245), L-histidine (MESH:D006639), methanol (MESH:D000432), hercynine (MESH:C007928), CHES (MESH:C050927), mycothiol (MESH:C089265), penicillins (MESH:D010406), Tyloxapol (MESH:C016811), Amino acid (MESH:D000596), PBS (MESH:D007854), Asn (MESH:D001216), aminoglycosides (MESH:D000617), acetonitrile (MESH:C032159), coenzyme A (MESH:D003065), cephalosporins (MESH:D002511), morphine (MESH:D009020), 5-aminoimidazole-4-carboxamide ribotide (MESH:C031143)
- **Species:** Mycolicibacterium smegmatis (species) [taxon 1772], Mycobacterium tuberculosis (species) [taxon 1773], Homo sapiens (human, species) [taxon 9606], Bacteria Latreille et al. 1825 (Bacteria stick insect, genus) [taxon 629395], Mus musculus (house mouse, species) [taxon 10090], Escherichia coli (E. coli, species) [taxon 562], Mycobacterium tuberculosis H37Rv (strain) [taxon 83332]
- **Mutations:** D216V, T238'V, T238, L253, D218, T248'V, L275D, L275, L253'A, A249, D216, D218L, A273, A249K, L275A, A273G
- **Cell lines:** NEB5alpha — Mus musculus (Mouse), Hybridoma (CVCL_B5J7), BL21(DE3) — Mus musculus (Mouse), Hybridoma (CVCL_B7HM), H37Rv — Homo sapiens (Human), Prostate carcinoma, Cancer cell line (CVCL_1045)

## Figures

4 figures with captions in the complete paper: https://tomesphere.com/paper/PMC13018310/full.md

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Source: https://tomesphere.com/paper/PMC13018310