# DNase I as a probe for unpolymerized actin: revisiting a classic tool for nuclear actin research

**Authors:** Anika Göpel, Laura Bauer, Dörthe M. Katschinski, Anke Zieseniss

PMC · DOI: 10.1007/s00424-026-03158-z · 2026-03-26

## TL;DR

This paper reviews DNase I as a tool to detect unpolymerized actin in cells, focusing on its use in nuclear actin research and practical considerations for accurate results.

## Contribution

The paper revisits DNase I's molecular basis and provides practical guidance for its use in detecting unpolymerized actin in fixed cells.

## Key findings

- DNase I binds to unpolymerized actin and can detect monomeric actin in fixed cells.
- Fixation conditions strongly influence DNase I staining outcomes and signal distribution.
- Divalent cations and enzymatic activity affect DNase I binding and DNA interactions.

## Abstract

Actin is a key component of the cytoskeleton and also plays diverse roles within the cell nucleus. While polymerized F-actin can be detected using a wide range of probes, reliable methods to identify unpolymerized (“G-”) actin in fixed cells are relatively limited. Fluorescently labeled DNase I has long served as a high-affinity probe for monomeric actin and has recently gained renewed interest in nuclear actin research. Here, we briefly review established methods for visualizing actin in the cytoplasm and nucleus and revisit the history and molecular basis of the DNase I–actin interaction that forms the basis for DNase I staining. We then highlight practical considerations for interpreting DNase I fluorescence signals, such as its binding to filament pointed ends, the influence of divalent cations on its enzymatic activity and DNA binding, and protocol-dependent variations. Notably, fixation conditions significantly influence staining outcomes, affecting the distribution of nuclear versus cytoplasmic signals. Overall, this review aims to provide a concise framework for effectively using DNase I staining to monitor cellular pools of unpolymerized actin in a consistent and interpretable way.

The online version contains supplementary material available at 10.1007/s00424-026-03158-z.

## Linked entities

- **Proteins:** ACTIN (hypothetical protein), Dnase1 (deoxyribonuclease I)

## Full-text entities

- **Genes:** MAL (mal, T cell differentiation protein (MAL blood group)) [NCBI Gene 4118] {aka HLD28, MVP17, VIP17}, GSN (gelsolin) [NCBI Gene 2934] {aka ADF, AGEL, AMYLD4}, GC (GC vitamin D binding protein) [NCBI Gene 2638] {aka DBP, DBP-maf, DBP/GC, GRD3, Gc-MAF, GcMAF}, TMSB4X (thymosin beta 4 X-linked) [NCBI Gene 7114] {aka FX, PTMB4, TB4X, TMSB4}, DNASE1L3 (deoxyribonuclease 1L3) [NCBI Gene 1776] {aka D3, DHP2, DNAS1L3, LSD, SLEB16}, ADA2 (adenosine deaminase 2) [NCBI Gene 51816] {aka ADGF, CECR1, IDGFL, PAN, SNEDS, VAIHS}, DNASE1 (deoxyribonuclease 1) [NCBI Gene 282217], PLAT (plasminogen activator, tissue type) [NCBI Gene 5327] {aka T-PA, TPA}, DBP (D-box binding PAR bZIP transcription factor) [NCBI Gene 1628] {aka DABP, taxREB302}, XPO6 (exportin 6) [NCBI Gene 23214] {aka EXP6, RANBP20}, Act5C (Actin 5C) [NCBI Gene 31521] {aka A, A4V404_DROME, ACT, ACT1_DROME, Ac5C, Act}, IPO9 (importin 9) [NCBI Gene 55705] {aka Imp9}, UTRN (utrophin) [NCBI Gene 7402] {aka DMDL, DRP, DRP1}, PHACTR1 (phosphatase and actin regulator 1) [NCBI Gene 221692] {aka DEE70, EIEE70, RPEL, RPEL1, dJ257A7.2}, Srf (Surf wings) [NCBI Gene 252723]
- **Diseases:** pleural infection (MESH:D010995), ischemic stroke (MESH:D002544), NETs (MESH:C536657), Acute Respiratory Distress Syndrome (MESH:D012128), tumor (MESH:D009369), sepsis (MESH:D018805), cystic fibrosis (MESH:D003550), antinuclear autoimmune diseases (MESH:D001327), lupus-like autoimmunity (MESH:D008180), vessel impairment (MESH:C536223), inflammation (MESH:D007249), empyema (MESH:D004653), traumatic brain injury (MESH:D000070642), necrosis (MESH:D009336), liver disease (MESH:D008107)
- **Chemicals:** rhodamine (MESH:D012235), acetone (MESH:D000096), Phalloidin (MESH:D010590), Triton X (MESH:D017830), jasplakinolide (MESH:C057531), aldehyde (MESH:D000447), Hoechst (-), Agarose (MESH:D012685), EGTA (MESH:D004533), lipid (MESH:D008055), Alexa Fluor 488 (MESH:C000711379), EDTA (MESH:D004492), DAPI (MESH:C007293), alcohol (MESH:D000438), PFA (MESH:C003043), PBS (MESH:D007854), methanol (MESH:D000432), oil (MESH:D009821), formaldehyde (MESH:D005557), ATP (MESH:D000255)
- **Species:** Bos taurus (bovine, species) [taxon 9913], Amanita phalloides (death cap, species) [taxon 67723], Drosophila melanogaster (fruit fly, species) [taxon 7227], Homo sapiens (human, species) [taxon 9606]
- **Cell lines:** HeLa — Homo sapiens (Human), Human papillomavirus-related endocervical adenocarcinoma, Cancer cell line (CVCL_0030), U2OS — Homo sapiens (Human), Osteosarcoma, Cancer cell line (CVCL_0042)

## Figures

4 figures with captions in the complete paper: https://tomesphere.com/paper/PMC13018090/full.md

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Source: https://tomesphere.com/paper/PMC13018090