# Insights Into Virus‐Encoded RNA Silencing Suppressors Across Viral Families: A Focus on Viruses Infecting Solanaceae Crops

**Authors:** Saumik Basu, Sayanta Bera, Sourav Pal, Shirin Parizad, Pooja Malhotra, Trishita Ghosh, Clare L. Casteel, David W. Crowder

PMC · DOI: 10.1111/ppl.70840 · Physiologia Plantarum · 2026-03-25

## TL;DR

This paper reviews how virus-encoded proteins help plant viruses evade defenses and cause disease, focusing on crops in the Solanaceae family.

## Contribution

The paper provides a comprehensive synthesis of the multifunctionality of viral RNA silencing suppressors in Solanaceae crops.

## Key findings

- VSRs suppress antiviral silencing and disrupt phytohormone signaling in host plants.
- VSRs downregulate R-gene-mediated host defense mechanisms.
- Understanding VSR-host interactions can aid in developing sustainable crop protection strategies.

## Abstract

Viral suppressors of RNA silencing (VSRs) are proteins that interfere with antiviral defense mechanisms and enhance infection. For plant viruses, VSRs can be encoded in viral genomes and satellite molecules and play an important role in the virus's life cycle and in overcoming host defenses. However, a comprehensive review on the multifunctionality of VSRs and their role in the worldwide spread of plant viral diseases has not been performed. Here, we aim to synthesize the current understanding of the role of VSRs in the pathogenesis of Solanaceous plants, a family that includes many crops and medicinal plants. We focus on three key areas: (1) the diversity of VSRs and the mechanisms used to suppress antiviral defense, (2) the role of VSRs in viral pathogenesis beyond interfering with host RNA‐silencing, and (3) the coevolution between VSRs and plant host proteins. Additionally, we describe how VSRs promote the development of diseases by altering various steps in viral pathogenicity via induction of counter‐defense mechanisms. Specifically, a substantial body of evidence suggests that VSRs induce the suppression of antiviral silencing, abrogation of phytohormone signaling, and downregulation of R‐gene‐mediated host defense. Furthermore, we discuss how identifying and characterizing novel interactions between VSRs and Solanaceous host factors may be leveraged for developing sustainable pathogen and pest management strategies.

## Linked entities

- **Species:** Solanaceae (taxon 4070)

## Full-text entities

- **Genes:** eIF4E [NCBI Gene 543653], SGS3 [NCBI Gene 100134882], SKP1 [NCBI Gene 101268328], DCL3 [NCBI Gene 101265460], RPS27A (ribosomal protein S27a) [NCBI Gene 6233] {aka CEP80, HEL112, S27A, UBA80, UBCEP1, UBCEP80}, AHCY (adenosylhomocysteinase) [NCBI Gene 191] {aka SAHH, adoHcyase}, AGO1 (argonaute RISC component 1) [NCBI Gene 26523] {aka EIF2C, EIF2C1, GERP95, NEDLBAS, Q99, hAgo1}, ALYREF (Aly/REF export factor) [NCBI Gene 10189] {aka ALY, ALY/REF, BEF, REF, THOC4}, NHLH1 (nescient helix-loop-helix 1) [NCBI Gene 4807] {aka HEN1, NSCL, NSCL1, bHLHa35}, CATALASE 3 [NCBI Gene 107771182], MUL1 (mitochondrial E3 ubiquitin protein ligase 1) [NCBI Gene 79594] {aka C1orf166, GIDE, MAPL, MULAN, RNF218}, CDKN2A (cyclin dependent kinase inhibitor 2A) [NCBI Gene 1029] {aka ARF, CAI2, CDK4I, CDKN2, CMM2, INK4}, ARF8b (auxin response factor 8b) [NCBI Gene 100301945] {aka ARF8, Sl-ARF8b}, AS1 [NCBI Gene 543875], SNF1 [NCBI Gene 778276], ADENOSINE KINASE [NCBI Gene 101262108], CATALASE 1 [NCBI Gene 107799583], heat shock protein 90 [NCBI Gene 101260143], DCL (protein DCL, chloroplastic) [NCBI Gene 544019], AGO1 [NCBI Gene 107790785], tm-2 (Tm-2 ToMV resistant protein) [NCBI Gene 101255420] {aka TM-2(2), Tm-2^2, Tm-2a, Tm-2nv}, MYC (MYC proto-oncogene, bHLH transcription factor) [NCBI Gene 4609] {aka MRTL, MYCC, bHLHe39, c-Myc}, MYC2 (transcription factor MYC2) [NCBI Gene 544165] {aka BHLH147, JA3, JAMYC2, LEJA3, LeMYC2, SlMYC2}, DCL 4 [NCBI Gene 101055595]
- **Diseases:** ToLCV (MESH:D004381), developmental defects (MESH:D000094602), NSs (MESH:D011488), infection (MESH:D007239), TGS (MESH:C537680), necrotic (MESH:D009336), developmental abnormalities (MESH:D006130), CMV infection (MESH:D014777), CMV 2b (MESH:C536043)
- **Chemicals:** ethylene (MESH:C036216), Jasmonic acid (MESH:C011006), 4-methoxy-indole-3-yl-methylglucosinolate (-), auxin (MESH:D007210), terpene (MESH:D013729), Tm-1 (MESH:C098227), sesquiterpenes (MESH:D012717), catechol (MESH:C034221), brassinosteroid (MESH:D060406), S-adenosyl methionine (MESH:D012436), SA (MESH:D020156), monoterpenes (MESH:D039821), glucosinolate (MESH:D005961), ROS (MESH:D017382), H2O2 (MESH:D006861), oxylipin (MESH:D054883)
- **Species:** Tomato mosaic virus (no rank) [taxon 12253], Nicotiana (genus) [taxon 4085], Tomato golden mosaic virus (no rank) [taxon 10831], Tobacco mosaic virus (no rank) [taxon 12242], Tomato leaf curl virus (no rank) [taxon 28350], Nepovirus (genus) [taxon 12270], Tomato mild mottle virus (no rank) [taxon 178599], Begomovirus (genus) [taxon 10814], Tomato aspermy virus (no rank) [taxon 12315], Triticum mosaic virus (no rank) [taxon 431317], Tomato yellow leaf curl China virus (no rank) [taxon 185793], Cucumber mosaic virus (cucumber mosaic cucumovirus, no rank) [taxon 12305], Trichoderma sp. AV (species) [taxon 1852203], Tetranychus urticae (red spider mite, species) [taxon 32264], Tomato leaf curl Palampur virus (no rank) [taxon 526476], Tomato leaf curl New Delhi virus (no rank) [taxon 223347], Tobamovirus (genus) [taxon 12234], Solanum peruvianum (Peruvian tomato, species) [taxon 4082], Tospovirus [taxon 11611], Beet curly top virus (no rank) [taxon 10840], Wheat streak mosaic virus (no rank) [taxon 31741], Tombusvirus (genus) [taxon 12141], Arabidopsis thaliana (mouse-ear cress, species) [taxon 3702], Tomato yellow ring virus (no rank) [taxon 304859], Wheat yellow mosaic virus (no rank) [taxon 75746], Clostridium sp. ATCC 29733 (species) [taxon 1507], Solanum tuberosum (potatoes, species) [taxon 4113], Sugarcane streak mosaic virus (no rank) [taxon 53954], Nicotiana benthamiana (species) [taxon 4100], TSWV [taxon 1933298], Tomato ringspot virus (no rank) [taxon 12280], Solanum lycopersicum (tomato, species) [taxon 4081], Cucumovirus (genus) [taxon 12304], Frankliniella occidentalis (western flower thrips, species) [taxon 133901], Tomato yellow leaf curl Sardinia virus (no rank) [taxon 123735], Myzus persicae (green peach aphid, species) [taxon 13164], Rice yellow mottle virus (no rank) [taxon 31744], Acyrthosiphon pisum (pea aphid, species) [taxon 7029], Potyvirus (genus) [taxon 12195], Tobacco vein banding mosaic virus (no rank) [taxon 33765], Tomato yellow leaf curl virus (no rank) [taxon 10832], Tomato leaf curl Java virus (no rank) [taxon 263001], Potato virus Y (no rank) [taxon 12216], Xiphinema americanum (American dagger nematode, species) [taxon 208518], Olpidium brassicae (species) [taxon 70189], Tomato bushy stunt virus (no rank) [taxon 12145], Chenopodium quinoa (quinoa, species) [taxon 63459], Orthotospovirus (genus) [taxon 2560196], Cotton leaf curl Kokhran virus (no rank) [taxon 222464], Papaya leaf curl virus (no rank) [taxon 53260]

## Full text

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## Figures

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## References

224 references — full list in the complete paper: https://tomesphere.com/paper/PMC13017688/full.md

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Source: https://tomesphere.com/paper/PMC13017688