# Single-cell analysis of recruited ILC2 cell fate during transition from circulation to establishment of tissue residency

**Authors:** Amita Kashyap, Uryan I Can, Mindy M Miller, Bridget Farwell, Sarah E Stenske, Mukesh Verma, Richard Lee Reinhardt

PMC · DOI: 10.1093/jimmun/vkaf352 · The Journal of Immunology Author Choice · 2026-03-18

## TL;DR

This study explores how circulating ILC2 cells adapt and become lung-resident during infection, revealing their unique transition and functional contributions.

## Contribution

The study reveals the gene expression changes and functional adaptations of circulating ILC2s as they transition to lung residency during infection.

## Key findings

- Circulating ILC2s quickly adopt tissue-resident gene expression upon entering the lung.
- Converted ILC2s retain some intestinal-related gene expression linked to enhanced functionality.
- The transition to lung residency occurs mainly as cells enter the lung parenchyma from the vasculature.

## Abstract

Circulating group 2 innate lymphoid cells (ILC2s) often serve as a first line of defense against infection prior to local expansion of lung-resident ILC2s. The fate of circulating ILC2s and their relationship with lung-resident ILC2s is not well understood. Using reporter mice in combination with single-cell RNA sequencing (scRNA-seq) and Cellular Indexing of Transcriptomes and Epitopes sequencing (CITE-seq), the fate of circulatory ILC2s was followed during the course of primary Nippostrongylus brasiliensis helminth infection. Circulating ILC2s rapidly acquire tissue-resident gene expression upon arrival to the lung. This transition occurs primarily as the cells enter the parenchyma from the vasculature. Despite acquiring a lung-resident phenotype by the peak of the immune response, these converted ILC2s retain some unique gene expression related to their intestinal origins which correlate with enhanced functionality. Findings provide insight into the tissue adaptation of circulatory ILC2s during recruitment to the lung and establish their contribution to the lung-resident ILC2 population.

## Linked entities

- **Species:** Nippostrongylus brasiliensis (taxon 27835)

## Full-text entities

- **Genes:** trm (tremor) [NCBI Gene 22052], Csf2 (colony stimulating factor 2 (granulocyte-macrophage)) [NCBI Gene 12981] {aka CSF, Csfgm, GMCSF, Gm-CSf, MGI-IGM}, Il4 (interleukin 4) [NCBI Gene 16189] {aka BSF-1, Il-4}, Cxcr6 (C-X-C motif chemokine receptor 6) [NCBI Gene 80901] {aka BONZO, STRL33}, Junb (jun B proto-oncogene, AP-1 transcription factor subunit) [NCBI Gene 16477], Thy1 (thymus cell antigen 1, theta) [NCBI Gene 21838] {aka CD90, T25, Thy-1, Thy-1.2, Thy1.1, Thy1.2}, Cd4 (CD4 antigen) [NCBI Gene 12504] {aka L3T4, Ly-4}, Ly6g (lymphocyte antigen 6 family member G) [NCBI Gene 546644] {aka Gr-1, Gr1, Ly-6G}, S1pr1 (sphingosine-1-phosphate receptor 1) [NCBI Gene 13609] {aka Edg1, Lpb1, S1p, S1p1}, Il33 (interleukin 33) [NCBI Gene 77125] {aka 9230117N10Rik, Il-33, Il1f11, NF-HEV}, Itgax (integrin alpha X) [NCBI Gene 16411] {aka Cd11c, Cr4, N418}, Areg (amphiregulin) [NCBI Gene 11839] {aka AR, Mcub, Sdgf}, Stat6 (signal transducer and activator of transcription 6) [NCBI Gene 20852], Mki67 (antigen identified by monoclonal antibody Ki 67) [NCBI Gene 17345] {aka D630048A14Rik, Ki-67, Ki67}, Il13 (interleukin 13) [NCBI Gene 16163] {aka Il-13}, Cd3e (CD3 antigen, epsilon polypeptide) [NCBI Gene 12501] {aka CD3, CD3epsilon, T3e}, Itgb7 (integrin beta 7) [NCBI Gene 16421] {aka Ly69}, Fosb (Fos B proto-oncogene, AP-1 transcription factor subunit) [NCBI Gene 14282], Batf (basic leucine zipper transcription factor, ATF-like) [NCBI Gene 53314] {aka B-ATF, SFA-2}, Ly76 (lymphocyte antigen 76) [NCBI Gene 104231] {aka TER-119, Ter119}, Pdcd1 (programmed cell death 1) [NCBI Gene 18566] {aka Ly101, PD-1, Pdc1}, Cd69 (CD69 antigen) [NCBI Gene 12515] {aka 5830438K24Rik, AIM, VEA}, Ahr (aryl-hydrocarbon receptor) [NCBI Gene 11622] {aka Ah, Ahh, Ahre, In, bHLHe76}, Ptprc (protein tyrosine phosphatase receptor type C) [NCBI Gene 19264] {aka B220, CD45R, Cd45, L-CA, Ly-5, Lyt-4}, Itgae (integrin alpha E, epithelial-associated) [NCBI Gene 16407] {aka A530055J10, CD103, aM290, alpha-E1, alpha-M290}, Dach2 (dachshund family transcription factor 2) [NCBI Gene 93837] {aka 9430028N04Rik}, Fos (Fos proto-oncogene, AP-1 transcription factor subunit) [NCBI Gene 14281] {aka D12Rfj1, c-fos, cFos}, Maf (MAF bZIP transcription factor) [NCBI Gene 17132] {aka 2810401A20Rik, A230108G15Rik, c-maf}, Ccr9 (C-C motif chemokine receptor 9) [NCBI Gene 12769] {aka A130091K22Rik, Cmkbr10, GPR-9-6}, S1pr4 (sphingosine-1-phosphate receptor 4) [NCBI Gene 13611] {aka Edg6, Lpc1, S1p4}, Il7 (interleukin 7) [NCBI Gene 16196] {aka A630026I06Rik, Il-7, hlb368}, Zbtb20 (zinc finger and BTB domain containing 20) [NCBI Gene 56490] {aka 1300017A20Rik, 7330412A13Rik, A930017C21Rik, D16Wsu73e, DPZF, HOF}, Nr4a3 (nuclear receptor subfamily 4, group A, member 3) [NCBI Gene 18124] {aka CHN, CSMF, MINOR, NOR-1, Nor1, TEC}, Bach2 (BTB and CNC homology, basic leucine zipper transcription factor 2) [NCBI Gene 12014] {aka E030004N02Rik}, Il2 (interleukin 2) [NCBI Gene 16183] {aka Il-2}, Il1rl1 (interleukin 1 receptor-like 1) [NCBI Gene 17082] {aka DER4, Fit-1, Ly84, ST2L, St2, St2-rs1}, Klrb1c (killer cell lectin-like receptor subfamily B member 1C) [NCBI Gene 17059] {aka CD161, Klrb1b, Ly-59, Ly55c, Ly59, NK-RP1}, Gata3 (GATA binding protein 3) [NCBI Gene 14462] {aka Gata-3, jal}, Klrg1 (killer cell lectin-like receptor subfamily G, member 1) [NCBI Gene 50928] {aka 2F1-Ag, MAFA, MAFA-L}, Rag2 (recombination activating gene 2) [NCBI Gene 19374] {aka Rag-2}, Tslp (thymic stromal lymphopoietin) [NCBI Gene 53603], Il17rb (interleukin 17 receptor B) [NCBI Gene 50905] {aka Evi27, IL-17ER, IL-17Rh1, IL17RH1, Il17br}, Il7r (interleukin 7 receptor) [NCBI Gene 16197] {aka CD127, IL-7Ralpha}, Itgam (integrin alpha M) [NCBI Gene 16409] {aka CD11b/CD18, CR3, CR3A, Cd11b, F730045J24Rik, Ly-40}, Klf2 (Kruppel-like transcription factor 2 (lung)) [NCBI Gene 16598] {aka Lklf}, Cd8a (CD8 subunit alpha) [NCBI Gene 12525] {aka Ly-2, Ly-35, Ly-B, Lyt-2}, Ccr8 (C-C motif chemokine receptor 8) [NCBI Gene 12776] {aka C-C, C-C CKR-8, CC-CKR-8, CCR-8, CKR-8, Cmkbr8}, Nr4a2 (nuclear receptor subfamily 4, group A, member 2) [NCBI Gene 18227] {aka HZF-3, NOT, Nurr1, RNR-1, TINOR, TINUR}, Tcrb (T cell receptor beta chain) [NCBI Gene 21577] {aka TCRbeta, Tib}, Jun (Jun proto-oncogene, AP-1 transcription factor subunit) [NCBI Gene 16476] {aka AP-1, Junc, c-jun}, Cxcr4 (C-X-C motif chemokine receptor 4) [NCBI Gene 12767] {aka CD184, CXC-R4, CXCR-4, Cmkar4, LESTR, PB-CKR}, Il25 (interleukin 25) [NCBI Gene 140806] {aka IL-17e, IL-25, Il17e}, Il17a (interleukin 17A) [NCBI Gene 16171] {aka Ctla-8, Ctla8, IL-17, IL-17A, Il17}, Arg1 (arginase, liver) [NCBI Gene 11846] {aka AI, Arg-1, PGIF}, Il5 (interleukin 5) [NCBI Gene 16191] {aka Il-5}
- **Diseases:** rhinosinusitis (MESH:D000092562), UMAP (MESH:C567162), nasal polyps (MESH:D009298), asthma (MESH:D001249), Nb (MESH:D010229), inflammation (MESH:D007249), helminth infection (MESH:D007239), pulmonary helminth infection (MESH:D012141), intestinal helminths (MESH:D007410), lung and upper airways diseases (MESH:D008171), chronic obstructive pulmonary disease (MESH:D029424)
- **Chemicals:** S1P (MESH:C060506), FTY720 (MESH:D000068876), steroid (MESH:D013256), retinoic acid (MESH:D014212), HTO (-), prostaglandins (MESH:D011453), leukotrienes (MESH:D015289), DAPI (MESH:C007293)
- **Species:** Nippostrongylus brasiliensis (species) [taxon 27835], Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606]
- **Cell lines:** C57BL/6 — Mus musculus (Mouse), Transformed cell line (CVCL_C0MU), PK136 — Mus musculus (Mouse), Hybridoma (CVCL_7695), ILC2transf-5.2 — Homo sapiens (Human), Adult hepatocellular carcinoma, Cancer cell line (CVCL_X943), RB6-8C5 — Rattus norvegicus (Rat), Hybridoma (CVCL_J603), D13 — Mus musculus (Mouse), Hybridoma (CVCL_U036)

## Full text

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## Figures

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## References

84 references — full list in the complete paper: https://tomesphere.com/paper/PMC13017160/full.md

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Source: https://tomesphere.com/paper/PMC13017160