# Genetically Similar High-Risk Strains of Carbapenemase-Producing Enterobacterales in Humans and Companion Animals, United States

**Authors:** Lingzi Xiaoli, Allison E. James, Anna L. Stahl, Maho Okumura, Stephen D. Cole, Jaclyn M. Dietrich, Molly M. Leeper, Jordan K. Putney, Maroya Spalding Walters, Richard A. Stanton

PMC · DOI: 10.3201/eid3203.251458 · 2026-03-01

## TL;DR

This study finds that drug-resistant bacteria in US pets and humans are genetically similar, suggesting possible transmission between them.

## Contribution

The study identifies high-risk CP-CRE strains shared between humans and pets in the US, highlighting a One Health concern.

## Key findings

- Most CP-CRE sequences from US companion animals are part of One Health clusters with human isolates.
- 92% of clustered isolates carry the blaNDM-5 carbapenemase allele.
- Closely related subclusters link human and animal isolates geographically, indicating possible transmission.

## Abstract

To elucidate the zoonotic potential of carbapenemase-producing carbapenem-resistant Enterobacterales (CP-CRE) in US companion animals (i.e., dogs and cats), we queried the National Center for Biotechnology Pathogen Detection database to identify One Health clusters containing CP-CRE isolates from companion animals and humans. The 11 One Health clusters we found included most (69% [169/246]) publicly available CP-CRE sequences from US companion animals and were from 8 internationally disseminated, high-risk sequence types from 3 bacterial species (Escherichia coli, Klebsiella pneumoniae, and Enterobacter cloacae). All clustered isolates had New Delhi metallo-β-lactamase–family carbapenemases, and most (92%) carried the blaNDM-5 allele. The One Health clusters included several closely related subclusters with geographically linked isolates from both humans and companion animals. Those results suggest that CP-CRE is an emerging One Health issue and that direct or indirect transmission of CP-CRE is occurring between humans and companion animals in the United States.

## Linked entities

- **Species:** Escherichia coli (taxon 562), Klebsiella pneumoniae (taxon 573), Enterobacter cloacae (taxon 550)

## Full-text entities

- **Genes:** CP (ceruloplasmin) [NCBI Gene 1356] {aka AB073614, CP-2}, IMPA1 (inositol monophosphatase 1) [NCBI Gene 3612] {aka IMP, IMPA, MRT59}, VIM (vimentin) [NCBI Gene 7431]
- **Diseases:** CP-CRE (MESH:D060467), NDM (MESH:D007562), CP (MESH:D002972), CRE infections (MESH:D007239)
- **Chemicals:** beta-lactam (MESH:D047090), Carbapenem (MESH:D015780), CP (-)
- **Species:** Escherichia coli (E. coli, species) [taxon 562], Klebsiella pneumoniae (species) [taxon 573], Klebsiella oxytoca (species) [taxon 571], Canis lupus familiaris (dog, subspecies) [taxon 9615], Homo sapiens (human, species) [taxon 9606], Bacteria Latreille et al. 1825 (Bacteria stick insect, genus) [taxon 629395], Enterobacterales (order) [taxon 91347], Felis catus (cat, species) [taxon 9685], Enterobacter cloacae (species) [taxon 550]

## Figures

3 figures with captions in the complete paper: https://tomesphere.com/paper/PMC13016009/full.md

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Source: https://tomesphere.com/paper/PMC13016009