# Beyond Short Microhomologies: Mismatch‐Compatible Pol θ‐Mediated DNA Damage Repair

**Authors:** Yuzhen Li, Richard D. Wood

PMC · DOI: 10.1002/bies.70129 · 2026-03-25

## TL;DR

This paper explores how DNA polymerase θ repairs DNA breaks using mismatch-compatible microhomologies, expanding our understanding of its role in DNA repair and cancer.

## Contribution

The paper introduces a revised definition of microhomologies used by Pol θ, including mismatch-compatible sequences.

## Key findings

- Pol θ can utilize mismatch-compatible microhomologies for DNA repair.
- The revised definition of microhomologies is applicable across species.
- Mismatch-compatible microhomologies expand Pol θ-associated mutational signatures.

## Abstract

DNA polymerase θ (Pol θ)‐mediated end‐joining (TMEJ), one of several pathways for repairing DNA double‐strand breaks, is traditionally thought to initiate via anchoring at short, consecutive, and perfectly matched microhomologies (MHs). Emerging evidence indicates that Pol θ can utilize MHs containing mismatches both in vitro and in vivo. This revised definition of MH provides a mechanistic explanation for a broader spectrum of Pol θ‐dependent repair outcomes. Here, we summarize recent findings on the revised definition of MHs utilized by Pol θ, assess the applicability of this concept across species, and compare TMEJ with other (micro)hom(e)ology‐mediated repair pathways. We explore how mismatch‐containing MHs expand Pol θ‐associated mutational signatures and provide a framework for future studies on Pol θ’s role in DNA repair and cancer biology.

Pol θ is traditionally thought to use a short, perfectly matched microhomology (MH) to initiate end‐joining repair of a DNA double‐strand break. Emerging evidence indicates that Pol θ generally utilizes mismatch‐compatible longer microhomologies. This revised definition of MH is applicable across species and broadens the definition of Pol θ‐associated mutational signatures.

## Full-text entities

- **Genes:** MRE11 (MRE11 double strand break repair nuclease) [NCBI Gene 4361] {aka ATLD, HNGS1, MRE11A, MRE11B}, RAD51 (recombinase RAD51) [NCBI Gene 856831] {aka MUT5}, PolQ (DNA polymerase theta) [NCBI Gene 41571] {aka 0443/09, AAF54858, CG6019, DNApol-theta, Dmel\CG6019, Mus308}, DMC1 (DNA meiotic recombinase 1) [NCBI Gene 11144] {aka DMC1H, LIM15, dJ199H16.1}, RPA3 (Replication protein A3) [NCBI Gene 32113] {aka BcDNA:RH55360, CG15220, D-SSB, DRP-A, DmRPA, Dmel\CG15220}, RPA1 (Replication protein A1) [NCBI Gene 40972] {aka CG9633, D-RPA70, D-SSB, DRP-A, DmRPA, Dmel\CG9633}, RBBP8 (RB binding protein 8, endonuclease) [NCBI Gene 5932] {aka COM1, CTIP, JAWAD, JWDS, RIM, SAE2}, PolD1 (DNA polymerase delta subunit 1) [NCBI Gene 39746] {aka 5949, CAA61369, CG5949, DNA Pol Delta, DNA pol delta, DNApol-delta}, POLQ (DNA polymerase theta) [NCBI Gene 10721] {aka PRO0327}, REV1 (deoxycytidyl transferase) [NCBI Gene 854527], RAD52 (recombinase RAD52) [NCBI Gene 854976], NBN (nibrin) [NCBI Gene 4683] {aka AT-V1, AT-V2, ATV, NBS, NBS1, P95}, RAD51 (RAD51 recombinase) [NCBI Gene 5888] {aka BRCC5, FANCR, HRAD51, HsRad51, HsT16930, MRMV2}
- **Diseases:** MMBIR (MESH:D019457), BRCA-deficient (MESH:D001941), tumorigenesis (MESH:D063646), TMEJ (MESH:D003643), MH (MESH:C535694), lung adenocarcinoma (MESH:D000077192), genomic (MESH:D042822), Cancer (MESH:D009369)
- **Chemicals:** G4e (-), psoralen (MESH:D005363)
- **Species:** Homo sapiens (human, species) [taxon 9606], C. elegans [taxon 328850], Drosophila melanogaster (fruit fly, species) [taxon 7227], Caenorhabditis elegans (species) [taxon 6239], Mus musculus (house mouse, species) [taxon 10090], Danio rerio (leopard danio, species) [taxon 7955], Cercopithecidae (monkey, family) [taxon 9527], Arabidopsis thaliana (mouse-ear cress, species) [taxon 3702], Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932], Escherichia coli (E. coli, species) [taxon 562], Agrobacterium (genus) [taxon 357]
- **Cell lines:** K562 — Homo sapiens (Human), Blast phase chronic myelogenous leukemia, BCR-ABL1 positive, Cancer cell line (CVCL_0004)

## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC13015775/full.md

---
Source: https://tomesphere.com/paper/PMC13015775