# METTL3-driven m6A modification of NLRC5 promotes renal fibrosis in chronic kidney disease through Keap1/Nrf2/ARE signaling pathway

**Authors:** Mingzhi Xu, Ruman Chen, Xin Zeng, Mingjiao Pan, Chunli Wang, Yonghui Qi, Na An, Yafei Bai

PMC · DOI: 10.3389/fimmu.2026.1739011 · 2026-03-11

## TL;DR

This study shows that METTL3 promotes kidney fibrosis by modifying NLRC5, which disrupts a protective antioxidant pathway, suggesting a new target for treating chronic kidney disease.

## Contribution

The novel finding is that METTL3 stabilizes NLRC5 mRNA via m6A modification, thereby suppressing the Keap1/Nrf2/ARE pathway and promoting renal fibrosis.

## Key findings

- METTL3-mediated m6A modification stabilizes NLRC5 mRNA in renal cells.
- NLRC5 inhibition or METTL3 inhibition reduces fibrosis and activates the Keap1/Nrf2/ARE pathway.
- Targeting the METTL3/NLRC5/Keap1/Nrf2/ARE axis may offer a new therapeutic strategy for CKD.

## Abstract

METTL3-mediated m6A RNA methylation has been implicated in renal fibrosis, a central pathological feature of chronic kidney disease (CKD). NLRC5, the largest NLR family member, is a direct m6A target of METTL3, but its role in METTL3-driven renal fibrosis remains unclear.

An in vitro renal fibrosis model was established using TGF-β1–stimulated human proximal tubular (HK-2) cells. METTL3-mediated m6A modification and stabilization of NLRC5 mRNA were assessed by m6A quantification, RNA stability, MeRIP, and RIP assays. Functional impacts on the Keap1/Nrf2/ARE pathway and fibrotic responses were examined using METTL3 inhibition (STM2457, 10 μM), NLRC5 knockdown or overexpression, Keap1 overexpression, and Nrf2 inhibition (ML385, 5 μM). Fibrotic markers, inflammatory cytokines (IL-1β, TNF-α; ELISA), and oxidative stress (ROS/DCF-DA, SOD, MDA) were measured. NLRC5-overexpression effects on the Keap1/Nrf2/ARE pathway were additionally evaluated. In vivo validation employed a unilateral ureteral obstruction (UUO) mouse model, with kidney injury and fibrosis assessed via H&E, Masson’s staining, IHC, ELISA, Western blot, and qRT-PCR.

TGF-β1 upregulated METTL3, NLRC5, and global m6A levels in HK-2 cells. METTL3 directly bound and stabilized NLRC5 mRNA via m6A modification. METTL3 overexpression exacerbated TGF-β1-induced inflammation, oxidative stress, and fibrosis, which were reversed by STM2457. Conversely, METTL3 or NLRC5 inhibition suppressed fibrosis, coinciding with Keap1 downregulation and Nrf2/HO-1/NQO1 upregulation. Keap1 overexpression negated the anti-fibrotic effects of NLRC5 knockdown, while NLRC5 overexpression decreased nuclear Nrf2 and downstream antioxidant targets, confirming NLRC5’s inhibitory role on Keap1/Nrf2 signaling. Nrf2 inhibition (ML385) or NLRC5 overexpression rescued METTL3 knockdown phenotypes. In vivo, METTL3 knockdown attenuated UUO-induced renal injury and fibrosis, activating the Keap1/Nrf2/ARE pathway.

METTL3 promotes renal fibrosis by stabilizing NLRC5 mRNA via m6A modification, leading to suppression of the protective Keap1/Nrf2/ARE pathway. Targeting the METTL3/NLRC5/Keap1/Nrf2/ARE axis may represent a promising therapeutic strategy for CKD-associated fibrosis.

## Linked entities

- **Genes:** METTL3 (methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit) [NCBI Gene 56339], NLRC5 (NLR family CARD domain containing 5) [NCBI Gene 84166], KEAP1 (kelch like ECH associated protein 1) [NCBI Gene 9817], GABPA (GA binding protein transcription factor subunit alpha) [NCBI Gene 2551], are (Arylesterase) [NCBI Gene 59246804], HMOX1 (heme oxygenase 1) [NCBI Gene 3162], NQO1 (NAD(P)H quinone dehydrogenase 1) [NCBI Gene 1728]
- **Chemicals:** STM2457 (PubChem CID 155167581), ML385 (PubChem CID 1383822), MDA (PubChem CID 1614)
- **Diseases:** chronic kidney disease (MONDO:0005300), renal fibrosis (MONDO:0000494)
- **Species:** Mus musculus (taxon 10090)

## Full-text entities

- **Genes:** TGFB1 (transforming growth factor beta 1) [NCBI Gene 7040] {aka CAEND1, CED, DPD1, IBDIMDE, LAP, TGF-beta1}, HMOX1 (heme oxygenase 1) [NCBI Gene 3162] {aka HMOX1D, HO-1, HSP32, bK286B10}, KEAP1 (kelch like ECH associated protein 1) [NCBI Gene 9817] {aka INrf2, KLHL19}, METTL3 (methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit) [NCBI Gene 56339] {aka IME4, M6A, MT-A70, Spo8, hMETTL3}, NLRC5 (NLR family CARD domain containing 5) [NCBI Gene 84166] {aka CLR16.1, NOD27, NOD4}, IL1B (interleukin 1 beta) [NCBI Gene 3553] {aka IL-1, IL1-BETA, IL1F2, IL1beta}, TNF (tumor necrosis factor) [NCBI Gene 7124] {aka DIF, IMD127, TNF-alpha, TNFA, TNFSF2, TNLG1F}, NQO1 (NAD(P)H quinone dehydrogenase 1) [NCBI Gene 1728] {aka DHQU, DIA4, DTD, NMOR1, NMORI, QR1}, NFE2L2 (NFE2 like bZIP transcription factor 2) [NCBI Gene 4780] {aka IMDDHH, NRF2, Nrf-2}, SOD1 (superoxide dismutase 1) [NCBI Gene 6647] {aka ALS, ALS1, HEL-S-44, IPOA, SOD, STAHP}
- **Diseases:** kidney injury (MESH:D007674), inflammation (MESH:D007249), CKD (MESH:D051436), UUO (MESH:D014517), fibrosis (MESH:D005355)
- **Chemicals:** m6A (MESH:C005955), MDA (MESH:D015104), ML385 (-), DCF-DA (MESH:C029569)
- **Species:** Homo sapiens (human, species) [taxon 9606], Mus musculus (house mouse, species) [taxon 10090]

## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC13014212/full.md

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Source: https://tomesphere.com/paper/PMC13014212