# Inhibition of CDK9 alleviates osteoarthritis by suppressing inflammation and reducing chondrocyte apoptosis

**Authors:** Bo Zhang, Zebin Wu, Wentao Wang, Hao Xu, Yuhu Zhao, Po Zhang, Yaozeng Xu

PMC · DOI: 10.3389/fphar.2026.1784174 · 2026-03-11

## TL;DR

Inhibiting CDK9 reduces joint inflammation and cartilage damage in osteoarthritis, suggesting it could be a new treatment target.

## Contribution

This study identifies CDK9 as a novel therapeutic target for posttraumatic osteoarthritis by linking it to inflammation and cartilage cell death.

## Key findings

- CDK9 inhibition reduced inflammation and chondrocyte apoptosis in both in vitro and in vivo models of PTOA.
- Flavopiridol treatment improved joint function and reduced cartilage degradation in rats.
- IL-1β reversed the beneficial effects of CDK9 inhibition, indicating CDK9's role in NF-κB signaling.

## Abstract

Posttraumatic osteoarthritis (PTOA) develops following joint trauma and leads to pain and functional impairment. This study aimed to investigate the role and mechanism of cyclin-dependent kinase 9 (CDK9) in PTOA progression.

We established an in vitro PTOA model by treating primary rat chondrocytes with lipopolysaccharide (LPS). CDK9 expression was modulated using siRNA, overexpression plasmids, and the inhibitor flavopiridol (FLA). Inflammatory cytokines were quantified by ELISA. RT-qPCR and Western blot were used to assess CDK9 and NF-κB pathway components. Cell viability and apoptosis were measured by CCK-8 assay and flow cytometry, respectively. An in vivo PTOA rat model was generated by medial meniscectomy (MMx). Rats received intra-articular injections of FLA (1, 3.5, 7.5 mg/kg) or IL-1β. Histopathological changes were evaluated by hematoxylin-eosin (HE) and Safranin O-Fast Green staining.

In vitro, FLA and si-CDK9 attenuated LPS-induced inflammation and apoptosis, enhanced cell viability, and suppressed CDK9/NF-κB activation. Conversely, CDK9 overexpression exacerbated these detrimental effects. In vivo, FLA treatment (particularly at 7.5 mg/kg) significantly inhibited CDK9 and NF-κB activation in articular cartilage, improved mechanical withdrawal threshold and locomotor activity, reduced cartilage degradation, and lowered levels of TGF-β, IL-6, TNF-α, and IL-1β. However, co-administration of IL-1β, an NF-κB activator, reversed the therapeutic effects of FLA in both models.

Our findings demonstrate that CDK9 plays a critical role in PTOA pathogenesis. Inhibition of CDK9 alleviates disease progression by suppressing the NF-κB signaling pathway, highlighting its potential as a therapeutic target for PTOA.

## Linked entities

- **Genes:** CDK9 (cyclin dependent kinase 9) [NCBI Gene 1025], NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790]
- **Chemicals:** flavopiridol (PubChem CID 5287969), IL-6 (PubChem CID 165368475)
- **Diseases:** osteoarthritis (MONDO:0005178)
- **Species:** Rattus norvegicus (taxon 10116)

## Full-text entities

- **Genes:** Il1b (interleukin 1 beta) [NCBI Gene 24494] {aka IL-1F2}, Il6 (interleukin 6) [NCBI Gene 24498] {aka ILg6, Ifnb2}, Cdk9 (cyclin-dependent kinase 9) [NCBI Gene 362110], Tnf (tumor necrosis factor) [NCBI Gene 24835] {aka RATTNF, TNF-alpha, Tnfa}, Tgfb1 (transforming growth factor, beta 1) [NCBI Gene 59086] {aka Tgfb}
- **Diseases:** cartilage (MESH:D002357), Inflammatory (MESH:D007249), joint trauma (MESH:D014947), functional impairment (MESH:D003072), pain (MESH:D010146), PTOA (MESH:D010003)
- **Chemicals:** FLA (MESH:C077990), hematoxylin (MESH:D006416), LPS (MESH:D008070), Safranin O-Fast Green (-), CCK-8 (MESH:D012844)
- **Species:** Rattus norvegicus (brown rat, species) [taxon 10116]

## Figures

8 figures with captions in the complete paper: https://tomesphere.com/paper/PMC13014100/full.md

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Source: https://tomesphere.com/paper/PMC13014100