# Bilirubin directly activates RIPK3 to induce non-classical necroptosis

**Authors:** Qian Xue, Xi Ma, Ziyuan Chen, Feifei Ge, Jiawen Wu, Wenhao Bao, Li Zhou, Wei Yi, Min Wu, Siyan Liao, Wenwen Xu, Rongrong He, Jingcheng Feng, Yameng Hu, Xi Chen, Xintian Wu, Ding Yan, Daolin Tang, Xin Chen, Jinbao Liu

PMC · DOI: 10.1038/s41421-026-00876-7 · 2026-03-24

## TL;DR

Bilirubin, known for antioxidant properties, was found to activate RIPK3 and cause neurotoxicity through a non-classical necroptosis pathway.

## Contribution

The study reveals a novel, RIPK1-independent mechanism of RIPK3 activation by bilirubin, leading to non-canonical necroptosis.

## Key findings

- Bilirubin directly binds to RIPK3 residues D161 and S102, triggering its oligomerization and autophosphorylation.
- Bilirubin-induced necroptosis does not require the RHIM domain of RIPK3 or other RHIM-containing proteins.
- Depletion of Ripk3 reduces bilirubin-induced neurotoxicity in mouse models.

## Abstract

Bilirubin, a byproduct of heme metabolism, is traditionally recognized for its antioxidant properties. However, its accumulation under pathological conditions can result in severe clinical manifestations, including neurotoxicity. Here, we report that bilirubin acts as an activator of receptor-interacting protein kinase 3 (RIPK3), inducing necroptosis and contributing to neurotoxic effects. Unlike the canonical pathway, in which RIPK3-mediated necroptosis is dependent on RIPK1, bilirubin directly binds to the D161 and S102 residues within the kinase domain of RIPK3. This binding facilitates RIPK3 oligomerization and autophosphorylation, leading to the activation of MLKL, the primary effector of necroptosis. Notably, bilirubin-induced necroptosis does not require the RHIM domain of RIPK3 or other RHIM-containing proteins, such as ZBP1 and TRIF. Functionally, the depletion of Ripk3 reduces bilirubin-induced neurotoxicity in murine models. These findings reveal a previously unrecognized mechanism of RIPK3-mediated non-canonical necroptosis, establishing it as a key mediator of bilirubin-induced neurotoxicity.

## Linked entities

- **Genes:** RIPK3 (receptor interacting serine/threonine kinase 3) [NCBI Gene 11035], RIPK1 (receptor interacting serine/threonine kinase 1) [NCBI Gene 8737], MLKL (mixed lineage kinase domain like pseudokinase) [NCBI Gene 197259], ZBP1 (Z-DNA binding protein 1) [NCBI Gene 81030], TRIM69 (tripartite motif containing 69) [NCBI Gene 140691]
- **Chemicals:** bilirubin (PubChem CID 5280352)

## Full-text entities

- **Genes:** Usp14 (ubiquitin specific peptidase 14) [NCBI Gene 59025] {aka 2610005K12Rik, 2610037B11Rik, ax, nmf375}, Iba1 (induction of brown adipocytes 1) [NCBI Gene 114737], TICAM1 (TIR domain containing adaptor molecule 1) [NCBI Gene 148022] {aka IIAE6, MyD88-3, PRVTIRB, TICAM-1, TRIF}, Ticam2 (TIR domain containing adaptor molecule 2) [NCBI Gene 225471] {aka B430113A10, TICAM-2, TRAM, Tirp, Trif}, Pcsk1 (proprotein convertase subtilisin/kexin type 1) [NCBI Gene 18548] {aka Nec-1, Nec1, PC1, PC3, Phpp-1, SPC3}, Tnf (tumor necrosis factor) [NCBI Gene 21926] {aka DIF, TNF-a, TNF-alpha, TNFSF2, TNFalpha, Tnfa}, Dntt (deoxynucleotidyltransferase, terminal) [NCBI Gene 21673] {aka Tdt}, Ifnb1 (interferon beta 1, fibroblast) [NCBI Gene 15977] {aka IFN-beta, IFNB, If1da1, Ifb}, Ugt1a1 (UDP glucuronosyltransferase 1 family, polypeptide A1) [NCBI Gene 394436] {aka Gnt1, UDPGT 1-1, UGT1A01, Udpgt-1a, UgtBr1}, RIPK1 (receptor interacting serine/threonine kinase 1) [NCBI Gene 8737] {aka AIEFL, IMD57, RIP, RIP-1, RIP1}, Ripk1 (receptor (TNFRSF)-interacting serine-threonine kinase 1) [NCBI Gene 19766] {aka D330015H01Rik, RIP, RIP-1, Rinp, Rip1}, Zbp1 (Z-DNA binding protein 1) [NCBI Gene 58203] {aka 2010010H03Rik, Dai, Dlm1, mZaDLM}, Ripk3 (receptor-interacting serine-threonine kinase 3) [NCBI Gene 56532] {aka 2610528K09Rik, Rip3}, RIPK3 (receptor interacting serine/threonine kinase 3) [NCBI Gene 11035] {aka RIP3}, Il1a (interleukin 1 alpha) [NCBI Gene 16175] {aka Il-1a}, Slc9a1 (solute carrier family 9 (sodium/hydrogen exchanger), member 1) [NCBI Gene 20544] {aka Apnh, Mir5122, Nhe1, mir-5122, swe}, Rbfox3 (RNA binding protein, fox-1 homolog (C. elegans) 3) [NCBI Gene 52897] {aka Fox-3, Hrnbp3, NeuN, Neuna60}, Casp8 (caspase 8) [NCBI Gene 12370] {aka CASP-8, FLICE, MACH, Mch5}, Alb (albumin) [NCBI Gene 11657] {aka Alb-1, Alb1, BCL001, BCL002, BPL001}, MLKL (mixed lineage kinase domain like pseudokinase) [NCBI Gene 197259] {aka hMLKL}, ZBP1 (Z-DNA binding protein 1) [NCBI Gene 81030] {aka C20orf183, DAI, DLM-1, DLM1}, Uchl5 (ubiquitin carboxyl-terminal esterase L5) [NCBI Gene 56207] {aka 5830413B11Rik, Uch37}, Ticam1 (TIR domain containing adaptor molecule 1) [NCBI Gene 106759] {aka TICAM-1, TRIF}, Mlkl (mixed lineage kinase domain-like) [NCBI Gene 74568] {aka 9130019I15Rik}
- **Diseases:** neurological impairment (MESH:D009422), CRC (MESH:D015179), cytotoxicity (MESH:D064420), neurotoxic (MESH:D020258), hyperbilirubinemia (MESH:D006932), neonatal jaundice (MESH:D007567), neural injury (MESH:D014947), neuronal death (MESH:D009410), kernicterus (MESH:D007647), mycoplasma (MESH:D009175), inflammation (MESH:D007249), hepatic encephalopathy (MESH:D006501), necrotic (MESH:D009336), brain damage (MESH:D001925), Liver dysfunction (MESH:D017093), neurological damage (MESH:D020196), sepsis (MESH:D018805), vascular dysfunction (MESH:D002561), LDH (MESH:C538133), neuroblastoma (MESH:D009447)
- **Chemicals:** trichloroacetic acid (MESH:D014238), Biotin (MESH:D001710), necrostatin-1 (MESH:C507699), lipid (MESH:D008055), biotinylamidoethylacetamide (MESH:C064791), sodium hydroxide (MESH:D012972), Z (MESH:C000597310), oligomycin (MESH:D009840), 4',6-diamidino-2-phenylindole (MESH:C007293), SDS (MESH:D012967), MgCl2 (MESH:D015636), paraformaldehyde (MESH:C003043), Fer-1 (MESH:C573944), GlutaMAX (MESH:C054122), PI (MESH:D011419), HATU (MESH:C472082), F12 (MESH:C007782), acetic acid (MESH:D019342), T (MESH:D014316), dUTP (MESH:C027078), sodium pentobarbital (MESH:D010424), GSK'872 (MESH:C000633405), Triton X-100 (MESH:D017830), CHCl3 (MESH:D002725), streptomycin (MESH:D013307), 2-deoxyglucose (MESH:D003847), H (MESH:D006859), PVDF (MESH:C024865), calcium (MESH:D002118), luminol (MESH:D008165), TM (MESH:C020809), glucuronic acid (MESH:D020723), FITC-12-dUTP (-), CBL0137 (MESH:C000600493), brine (MESH:C017082), water (MESH:D014867), BCA (MESH:C047117), polyacrylamide (MESH:C016679), nitrogen (MESH:D009584), puromycin (MESH:D011691), CCl4 (MESH:D002251), heme (MESH:D006418), Hoechst 33342 (MESH:C017807), HCl (MESH:D006851), LPS (MESH:D008070), ATP (MESH:D000255), ZVAD-FMK (MESH:C096713), Tween 20 (MESH:D011136), CO2 (MESH:D002245), ascorbic acid (MESH:D001205), methanol (MESH:D000432), DMSO (MESH:D004121), penicillin (MESH:D010406), Bilirubin (MESH:D001663), Evans blue (MESH:D005070), PBS (MESH:D007854), DIPEA (MESH:C027070), N-acetylcysteine (MESH:D000111), NSA (MESH:C570695), Na (MESH:D012964)
- **Species:** Homo sapiens (human, species) [taxon 9606], Mus musculus (house mouse, species) [taxon 10090], Rattus norvegicus (brown rat, species) [taxon 10116]
- **Mutations:** S102A, S101A, N57A, V36F, R69H, K51, D161N, K51A, H156, Lys50, S101, C-64  C, Asp160, C) for 20, H156G, R96G, K50A, R69, D160N, R96, serine/threonine, S102
- **Cell lines:** MEFs — Mus musculus (Mouse), Finite cell line (CVCL_9115), CRL-2266 — Homo sapiens (Human), Beta thalassemia, Transformed cell line (CVCL_BT13), HT29 — Homo sapiens (Human), Colon adenocarcinoma, Cancer cell line (CVCL_0320), HT22 — Mus musculus (Mouse), Transformed cell line (CVCL_0321), CL-0137 — Homo sapiens (Human), Finite cell line (CVCL_X225), CRL — Sigmodon hispidus (Hispid cotton rat), Spontaneously immortalized cell line (CVCL_YD58), CL-0595 — Homo sapiens (Human), Methylmalonic aciduria, cblA type, Finite cell line (CVCL_AW72), L929 — Mus musculus (Mouse), Spontaneously immortalized cell line (CVCL_AR58), SCC281 — Homo sapiens (Human), Friedreich ataxia, Finite cell line (CVCL_ZB93), C8-D1A — Mus musculus (Mouse), Spontaneously immortalized cell line (CVCL_6379), SH-SY5Y — Homo sapiens (Human), Neuroblastoma, Cancer cell line (CVCL_0019), MN9D — Mus musculus (Mouse), Hybrid cell line (CVCL_M067), BV2 — Mus musculus (Mouse), Transformed cell line (CVCL_0182)

## Figures

10 figures with captions in the complete paper: https://tomesphere.com/paper/PMC13013812/full.md

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Source: https://tomesphere.com/paper/PMC13013812