# Genome-centric metagenomics reveals electroactive syntrophs in a conductive particle-dependent consortium from coastal sediments

**Authors:** Danijel Jovicic, Konstantinos Anestis, Jacek Fiutowski, Bo Barker Jørgensen, Kasper Urup Kjeldsen, Amelia-Elena Rotaru

PMC · DOI: 10.1038/s41467-026-70468-2 · 2026-03-24

## TL;DR

The study reveals a methane-producing microbial community in coastal sediments that relies on conductive particles to transfer electrons.

## Contribution

The discovery of a new electroactive genus, Ca. Geosyntrophus acetoxidans, and its role in a particle-dependent electron transfer pathway.

## Key findings

- Ca. Geosyntrophus acetoxidans has a complete acetate oxidation pathway and extracellular electron transfer machinery.
- Electrons from electrogenic syntrophs transfer via granular activated carbon to a Methanosarcina methanogen.
- A secondary syntroph, Lentimicrobium sp., provides an alternative electron transfer route for acetate oxidation.

## Abstract

Conductive particles are common in coastal sediments, yet their role in shaping methane-producing communities and pathways remains unclear. We applied genome-resolved metagenomics to a sediment-derived consortium serially transferred for a decade and obligately dependent on granular activated carbon (GAC). We discovered a particle-obligate food web composed of electrogenic syntrophic acetate oxidizers (SAO), an electrotrophic methanogen, and necromass recyclers. The primary SAO electrogen, Candidatus Geosyntrophus acetoxidans, represents a new genus and possesses a complete acetate oxidation pathway and extracellular electron-transfer (EET) machinery, including two porin-cytochrome conduits, 43 additional multiheme cytochromes and conductive pili. A secondary SAO, a Lentimicrobium sp. with a giant PCC-cluster, supplies an alternative EET-linked acetate-oxidation route. Electrons from electrogens transfer via GAC to a Methanosarcina equipped with the heptaheme cytochrome MmcA and flagellin for electron uptake. These results provide a genomic blueprint of this particle-obligate environmental consortium and suggest an overlooked acetate-to-methane electron-transfer route in geoconductor-rich anoxic sediments.

In this study, the authors provide a genomic blueprint for a conductive particle-dependent environmental consortium from coastal sediments and use long-read metagenomics to show how syntrophic partners can exchange electrons via conductive matrices.

## Linked entities

- **Proteins:** mmcA (methanogenesis multiheme c-type cytochrome)
- **Chemicals:** acetate (PubChem CID 175)
- **Species:** Candidatus Geosyntrophus acetoxidans (taxon 3714907), Lentimicrobium sp. (taxon 2034841), Methanosarcina (taxon 2207)

## Full-text entities

- **Genes:** PpcD [NCBI Gene 2685963], PpcA [NCBI Gene 2687027], ferredoxin [NCBI Gene 2685468], Pta [NCBI Gene 2685577], MAG [NCBI Gene 105356005], AckA [NCBI Gene 2685340]
- **Diseases:** PCC (MESH:D030401), GAC (MESH:D016586), CIET (MESH:D054069), SAO (MESH:D028361)
- **Chemicals:** phosphate (MESH:D010710), pyrite (MESH:C011342), NADH (MESH:D009243), proton (MESH:D011522), menaquinone (MESH:D024482), magnetite (MESH:D052203), Na+ (MESH:D012964), goethite (MESH:C094886), F420 (MESH:C007701), amino acid (MESH:D000596), Na2CO3 (MESH:C005686), Helium (MESH:D006371), NaHCO3 (MESH:D017693), hexamethyldisilazane (MESH:C024548), aromatic amino acid (MESH:D024322), CO2 (MESH:D002245), carbohydrate (MESH:D002241), greigite (MESH:C111959), taurine (MESH:D013654), pyruvate (MESH:D019289), acetyl-CoA (MESH:D000105), methylene-H4MPT (MESH:C091917), glutaraldehyde (MESH:D005976), Acetate (MESH:D000085), CoM (MESH:D015080), heme (MESH:D006418), N2 (MESH:D009584), acetyl-phosphate (MESH:C011632), water (MESH:D014867), sulfate (MESH:D013431), DeltamuH+ (-), H+ (MESH:D006859), CH4 (MESH:D008697), Ca (MESH:D002118), 13C (MESH:C000615229), acid (MESH:D000143), ethanol (MESH:D000431), methyl-CoM (MESH:C023349), activated carbon (MESH:D002244), FADH2 (MESH:C058805), tricarboxylic acid (MESH:D014233), acetic acid (MESH:D019342), methanofuran (MESH:C044289), iron oxides (MESH:C000499), ferrihydrite (MESH:C092844), H4MPT (MESH:C042416), CoB (MESH:C038357), Fe (MESH:D007501), methanophenazine (MESH:C111939)
- **Species:** Geobacteraceae (family) [taxon 213422], Desulforhopalus (genus) [taxon 40413], Methanosarcina sp. (species) [taxon 2213], Methanosarcina acetivorans C2A (strain) [taxon 188937], M. lacustris [taxon 125379], Glomus sp. Ac (species) [taxon 147394], Geobacter metallireducens (species) [taxon 28232], Oscillospira sp. F (species) [taxon 227390], Lentimicrobium sp. (species) [taxon 2034841], Bacteria Latreille et al. 1825 (Bacteria stick insect, genus) [taxon 629395], Geobacter sulfurreducens (species) [taxon 35554], Sedimentibacter (genus) [taxon 190972], Methanosarcina acetivorans (species) [taxon 2214], Geobacter sulfurreducens PCA (strain) [taxon 243231], Geobacter psychrophilus (species) [taxon 286698]
- **Cell lines:** S2 — Drosophila melanogaster (Fruit fly), Spontaneously immortalized cell line (CVCL_Z232)

## Figures

5 figures with captions in the complete paper: https://tomesphere.com/paper/PMC13013709/full.md

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Source: https://tomesphere.com/paper/PMC13013709