# Post-pandemic changes in population immunity have reduced the likelihood of emergence of zoonotic coronaviruses

**Authors:** Ryan M. Imrie, Laura A. Bissett, Savitha Raveendran, Maria Manali, Julien A. R. Amat, Laura Mojsiejczuk, Nicola Logan, Andrew Park, Marc Baguelin, Mafalda Viana, Brian J. Willett, Pablo R. Murcia

PMC · DOI: 10.1038/s41467-026-69988-8 · 2026-03-24

## TL;DR

Population immunity from SARS-CoV-2 and vaccines has reduced the chances of new coronaviruses emerging in humans.

## Contribution

The study shows how cross-immunity from SARS-CoV-2 reduces the likelihood of new sarbecovirus emergence.

## Key findings

- Sera from individuals with prior SARS-CoV-2 exposure showed cross-neutralizing antibodies against multiple sarbecoviruses.
- Population cross-immunity significantly reduces the likelihood of a novel sarbecovirus emerging.
- Highly specific SARS-CoV-2 vaccines may increase the risk of new virus emergence by reducing natural cross-protection.

## Abstract

Infections by endemic viruses, and the vaccines used to control them, often provide cross-protection against related viruses, potentially altering the transmission dynamics and likelihood of emergence of new zoonotic viruses with pandemic potential. Here, we investigate how population immunity after the COVID-19 pandemic has impacted the likelihood of emergence of a novel sarbecovirus, termed SARS-CoV-X. To this end, we combined empirical cross-neutralisation data with mathematical modelling to identify key immunological and epidemiological factors shaping sarbecovirus emergence. We show that sera from individuals with different COVID-19 immunological histories contained cross-neutralising antibodies against the spike (S) protein of multiple zoonotic sarbecoviruses. Simulations parameterised by these data predict that the likelihood of emergence of a novel sarbecovirus has been reduced significantly by population cross-immunity, with outcomes determined by the extent of cross-protection and R0 of the novel virus. Preventative vaccination against SARS-CoV-X using available COVID-19 vaccines can help resist emergence even in the presence of co-circulating SARS-CoV-2. However, a theoretical vaccine with high specificity to SARS-CoV-2 can increase emergence probability by suppressing SARS-CoV-2 prevalence and, by extension, levels of natural cross-protection. Overall, SARS-CoV-2 circulation and vaccination have generated widespread immunity against related sarbecoviruses, creating an immunological barrier to novel sarbecovirus emergence in humans.

Population immunity to SARS-CoV-2 may alter the epidemic potential of a novel coronavirus through cross-protection. Here, the authors investigate the extent of cross-protection against existing coronaviruses and estimate the extent to which this would influence transmission dynamics of a novel virus.

## Linked entities

- **Proteins:** CHMP5 (charged multivesicular body protein 5), S (Star)
- **Diseases:** SARS-CoV-2 (MONDO:0100096)

## Full-text entities

- **Genes:** ACE2 (angiotensin converting enzyme 2) [NCBI Gene 59272] {aka ACEH}, S (surface glycoprotein) [NCBI Gene 43740568] {aka spike glycoprotein}
- **Diseases:** smallpox (MESH:D012899), Coronavirus Infection (MESH:D018352), Infection (MESH:D007239), death (MESH:D003643), influenza (MESH:D007251), re-infection (MESH:D000084063), COVID-19 (MESH:D000086382), viral diseases (MESH:D014777), measles (MESH:D008457), zoonotic infections (MESH:D015047)
- **Chemicals:** polyethylenimine (MESH:D011094), BANAL-247 (-), streptomycin (MESH:D013307), L-glutamine (MESH:D005973), CO2 (MESH:D002245), penicillin (MESH:D010406)
- **Species:** Sarbecovirus (subgenus) [taxon 2509511], Homo sapiens (human, species) [taxon 9606], Middle East respiratory syndrome-related coronavirus (no rank) [taxon 1335626], Severe acute respiratory syndrome-related coronavirus (no rank) [taxon 694009], Coronaviridae (family) [taxon 11118], Severe acute respiratory syndrome coronavirus 2 (no rank) [taxon 2697049], Bacillus sp. AT (species) [taxon 1196779], Human immunodeficiency virus 1 (no rank) [taxon 11676], H5N1 subtype (serotype) [taxon 102793], Orthomyxoviridae (family) [taxon 11308], Respiratory syncytial virus (no rank) [taxon 12814], Gammacoronavirus (genus) [taxon 694013], Adenoviridae (family) [taxon 10508]
- **Mutations:** S-to-E, R-to-S, E-to-I, I-to-R
- **Cell lines:** HEK293-hACE2 — Homo sapiens (Human), Transformed cell line (CVCL_C1G1), HEK293T — Homo sapiens (Human), Transformed cell line (CVCL_0063), HEK293 — Homo sapiens (Human), Transformed cell line (CVCL_0045)

## Figures

5 figures with captions in the complete paper: https://tomesphere.com/paper/PMC13013692/full.md

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Source: https://tomesphere.com/paper/PMC13013692