# Structural transitions in the stepwise assembly of proteasome core particles

**Authors:** Eric Mark, Paula C. Ramos, Maria M. Nunes, Ana C. Matias, R. Jürgen Dohmen, Petra Wendler

PMC · DOI: 10.1038/s41467-026-70525-w · 2026-03-24

## TL;DR

This study reveals how proteasome core particles assemble through multiple pathways, with chaperones playing key roles in the process.

## Contribution

The paper shows that proteasome assembly in yeast involves alternative and potentially simultaneous pathways, not a single fixed trajectory.

## Key findings

- Cryo-EM structures reveal alternative assembly pathways for proteasome core particles in yeast.
- Ump1 and Pba1-Pba2 chaperones help structure β-subunits and prepare peptidase sites for activation.
- Pba1 interacts transiently with the α-ring, coordinating maturation and chaperone release.

## Abstract

20S catalytic core particles (CP) of eukaryotic 26S proteasomes are composed of two identical halves comprising 14 distinct subunits. 15S precursor complexes (PC) represent detectable half-CPs assembly intermediates lacking the β7-subunit but containing assembly chaperones Ump1 and Pba1-Pba2. Incorporation of β7 drives 15S-PC dimerisation and further CP maturation. Our cryo-EM structures of the yeast 15S-PC and all 13S-PC-derived intermediates suggest that assembly in yeast is not restricted to a single trajectory, but instead involves alternative, and potentially simultaneous pathways. Comparison of the intermediates reveals how Ump1 and β-subunits become structured with each additionally incorporated β-subunit, and how this prepares peptidase sites for auto-activation. We identify two transient interactions of Pba1 with the α-ring, which are important for an ordered progression of maturation. Pba1 loop 81-117 intercalates between subunits α3 and α4 in 13S-15S-PCs and is displaced upon 15S-PC dimerisation. The second interaction involves the α1 N-terminus, deletion of which leads to a defect in Pba1-Pba2 release. These findings indicate how changes in α-ring subunit conformations coordinate CP maturation with Pba1‑Pba2 release.

Eukaryotic 20S proteasomes assemble from 14 distinct subunits. Here, the authors use cryo-EM to analyze multiple intermediates showing that biogenesis involves alternative routes, rather than one fixed pathway. They also reveal roles of Ump1 and Pba1-Pba2 chaperones in orchestrating maturation.

## Linked entities

- **Proteins:** POMP (proteasome maturation protein), PSMG1 (proteasome assembly chaperone 1), Psmg2 (proteasome (prosome, macropain) assembly chaperone 2), CD80 (CD80 molecule), TCIRG1 (T cell immune regulator 1, ATPase H+ transporting V0 subunit a3), PLP2 (proteolipid protein 2), ATP6V0A1 (ATPase H+ transporting V0 subunit a1)

## Full-text entities

- **Genes:** PAC2 (Pac2p) [NCBI Gene 856724], UBI4 (ubiquitin) [NCBI Gene 850620] {aka SCD2, UB14}, POMP (proteasome maturation protein) [NCBI Gene 51371] {aka C13orf12, HSPC014, PNAS-110, PRAAS2, UMP1}, PRE1 (proteasome core particle subunit beta 4) [NCBI Gene 856731], PRE2 (proteasome core particle subunit beta 5) [NCBI Gene 856218] {aka DOA3, PRG1, SRR2}, UMP1 (Ump1p) [NCBI Gene 852471] {aka RNS2}, PBA1 (Pba1p) [NCBI Gene 850896] {aka POC1}, IGKV5-2 (immunoglobulin kappa variable 5-2) [NCBI Gene 28907] {aka B2, IGKV52}, RPT2 (proteasome regulatory particle base subunit RPT2) [NCBI Gene 851557] {aka YHS4, YTA5}, CD80 (CD80 molecule) [NCBI Gene 941] {aka B7, B7-1, B7.1, BB1, CD28LG, CD28LG1}, PRE9 (proteasome core particle subunit alpha 3) [NCBI Gene 853036], ADD66 (Add66p) [NCBI Gene 853629] {aka PBA2, POC2}, RPN4 (stress-regulated transcription factor RPN4) [NCBI Gene 851542] {aka SON1, UFD5}, GPHB5 (glycoprotein hormone subunit beta 5) [NCBI Gene 122876] {aka B5, GPB5, ZLUT1}, HMRA2 (homeodomain mating type protein a2) [NCBI Gene 850458] {aka A2}, BLM10 (proteasome activator BLM10) [NCBI Gene 850541] {aka YFL006W}, PRE3 (proteasome core particle subunit beta 1) [NCBI Gene 853456] {aka CRL21}, PAC1 (Pac1p) [NCBI Gene 854443] {aka LIS1}, MATALPHA1 (transcriptional co-activator mating type protein alpha) [NCBI Gene 850407] {aka ALPHA1}, PRS1 (ribose phosphate diphosphokinase subunit PRS1) [NCBI Gene 853654] {aka PRP1}, SCL1 (proteasome core particle subunit alpha 1) [NCBI Gene 852873] {aka PRC2}, PRE7 (proteasome core particle subunit beta 6) [NCBI Gene 852239] {aka PRS3}
- **Diseases:** immune dysregulation (OMIM:614878), PC (MESH:D054198), autoinflammation (MESH:D056660), genetic (MESH:D030342), PRAID (MESH:C000633744), CP (MESH:D020512), cancer (MESH:D009369)
- **Chemicals:** ATP (MESH:D000255), DTT (MESH:D004229), nitrogen (MESH:D009584), glucose (MESH:D005947), NaCl (MESH:D012965), Bis-Tris (MESH:C026272), PAA (MESH:D010463), ethane (MESH:D004980), PBS (MESH:D007854), CHAPSO (MESH:C048531), MgCl2 (MESH:D015636), EM (MESH:D004961), Glycerol (MESH:D005990), silver (MESH:D012834), EDTA (MESH:D004492), galactose (MESH:D005690), Hydrogen (MESH:D006859), PVDF (MESH:C024865), 13S (MESH:C005159), -PC (-), imidazole (MESH:C029899), carbon (MESH:D002244)
- **Species:** Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932], Rattus norvegicus (brown rat, species) [taxon 10116], Homo sapiens (human, species) [taxon 9606], Mus musculus (house mouse, species) [taxon 10090]
- **Mutations:** G34D, Leu34, F200C
- **Cell lines:** MO24 — Homo sapiens (Human), Transformed cell line (CVCL_SA78), GE28-92-2318 — Epinephelus awoara (Yellow grouper), Spontaneously immortalized cell line (CVCL_S930), MO27 — Homo sapiens (Human), Lung small cell carcinoma, Cancer cell line (CVCL_0C22), 13S — Homo sapiens (Human), Conditionally immortalized cell line (CVCL_LF75), PC — Homo sapiens (Human), Transformed cell line (CVCL_HP89), 26S — Homo sapiens (Human), Hybrid cell line (CVCL_B0UB)

## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC13013569/full.md

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Source: https://tomesphere.com/paper/PMC13013569