# A hybrid PKPD agent-based model of the tumour immune interaction: effects of anti-cancer combination therapy

**Authors:** Van Thuy Truong, Grant Lythe, Paolo Vicini, James W. T. Yates, Vincent F. S. Dubois

PMC · DOI: 10.1007/s10928-026-10021-2 · Journal of Pharmacokinetics and Pharmacodynamics · 2026-03-24

## TL;DR

This paper presents a detailed model to study how cancer cells and immune cells interact in response to various treatments, helping understand how combining therapies can work better or worse.

## Contribution

The novelty lies in a hybrid multiscale model integrating pharmacokinetics, pharmacodynamics, and tumor-immune interactions for combination therapy analysis.

## Key findings

- The model captures spatial-temporal dynamics of tumor-immune interactions and drug effects.
- It reveals insights into positive and negative synergies in combination therapies.
- Temporal sequencing of therapies significantly impacts treatment outcomes.

## Abstract

We have developed a three dimensional hybrid multiscale agent-based ODE PDE model including tumour immune interaction, cell cycle phases, oxygen and drug diffusion dynamics, the pharmacodynamics of chemotherapy, targeted therapies, immunotherapy, radiotherapy and the respective systemic exposure levels of pharmacological treatments (described by pharmacokinetic modelling). The aim of this model is to support understanding of the spatial-temporal dynamic interactions between cancer cells, the relevant immune cells, and targeted therapies’ molecular moieties, which interact simultaneously in the tumour microenvironment. This interaction is further investigated in the context of combination therapies, thus making some inroads in the mechanistic understanding of positive and negative synergies when multiple therapies are administered. This work addresses the role of temporal sequencing in combination therapies, which requires the simultaneous modelling of multiple system components.

The online version contains supplementary material available at 10.1007/s10928-026-10021-2.

## Full-text entities

- **Genes:** PDCD1 (programmed cell death 1) [NCBI Gene 5133] {aka ADMIO4, AIMTBS, CD279, PD-1, PD1, SLEB2}, CDK5 (cyclin dependent kinase 5) [NCBI Gene 1020] {aka LIS7, PSSALRE}, CD274 (CD274 molecule) [NCBI Gene 574058] {aka PDL1}, PDCD1LG2 (programmed cell death 1 ligand 2) [NCBI Gene 80380] {aka B7DC, Btdc, CD273, PD-L2, PDCD1L2, PDL2}, PTEN (phosphatase and tensin homolog) [NCBI Gene 5728] {aka 10q23del, BZS, CWS1, DEC, GLM2, MHAM}, PIK3CB (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta) [NCBI Gene 5291] {aka P110BETA, PI3K, PI3KBETA, PIK3C1}, AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207] {aka AKT, PKB, PKB-ALPHA, PRKBA, RAC, RAC-ALPHA}, H3P16 (H3 histone pseudogene 16) [NCBI Gene 644914] {aka H3.6, H3F3AP6, p21}, CD8A (CD8 subunit alpha) [NCBI Gene 925] {aka CD8, CD8alpha, IMD116, Leu2, p32}, IFNG (interferon gamma) [NCBI Gene 3458] {aka IFG, IFI, IMD69}, EGFR (epidermal growth factor receptor) [NCBI Gene 1956] {aka ERBB, ERBB1, ERRP, HER1, NISBD2, NNCIS}, CD274 (CD274 molecule) [NCBI Gene 29126] {aka ADMIO5, B7-H, B7H1, PD-L1, PDCD1L1, PDCD1LG1}, TP53 (tumor protein p53) [NCBI Gene 7157] {aka BCC7, BMFS5, LFS1, P53, TRP53}
- **Diseases:** Cancer (MESH:D009369), hypoxia (MESH:D000860), ABM (MESH:D019292), necrosis (MESH:D009336), hypoxic (MESH:D002534), Oncogenes (MESH:D000074723), cytotoxicity (MESH:D064420)
- **Chemicals:** flavopiridol (MESH:C077990), pembrolizumab (MESH:C582435), Oxygen (MESH:D010100), paclitaxel (MESH:D017239), Q3W (-), docetaxel (MESH:D000077143)
- **Species:** Homo sapiens (human, species) [taxon 9606]

## Full text

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## Figures

9 figures with captions in the complete paper: https://tomesphere.com/paper/PMC13013190/full.md

## References

10 references — full list in the complete paper: https://tomesphere.com/paper/PMC13013190/full.md

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Source: https://tomesphere.com/paper/PMC13013190