# IL-6 is one of the key factors in the formation of gut tissue resident memory T cells from Naïve T cells

**Authors:** Han G. Kim, Amanda Chan, Sinmanus Vimopatranon, Alexandre Girard, Andrew Jiang, Samuel Wertz, Il-Young Hwang, John H. Kehrl, Hana Schmeisser, Madelyn M. Seemiller, Paolo Lusso, Dawei Huang, Danlan Wei, Livia R. Goes, Marcelo Soares, Elena Martinelli, James Arthos, Claudia Cicala, Susan Ross, Susan Ross, Susan Ross

PMC · DOI: 10.1371/journal.ppat.1014052 · PLOS Pathogens · 2026-03-16

## TL;DR

This study identifies IL-6 as a key factor in the development of gut tissue resident memory T cells, which are important for long-term immunity and may help in creating better vaccines and treating gut inflammation.

## Contribution

The study reveals that IL-6, along with MAdCAM-1, TGF-β, and RA, is essential for differentiating naïve T cells into gut TRMs.

## Key findings

- IL-6 induces TRM-associated markers like CD69, CD103, and CCR5 in naïve CD4+ T cells.
- TRM differentiation occurs via JAK/STAT signaling and is suppressed by JAK/STAT antagonists.
- MAdCAM-1, TGF-β, RA, and IL-6 work together to promote TRM formation in mucosal environments.

## Abstract

Tissue resident memory CD4+ T cells (TRMs) populate mucosal sites and play a critical role in local immune responses. Gut TRM cells persist for extended periods in the gut mucosa where they rapidly respond to invading pathogens and provide long lasting protection. This study investigates the factors that mediate differentiation of naïve CD4+ T cells into cells presenting a gut TRM phenotype. Naïve CD4+ T cells were cultured under conditions that mimicked mucosal environments. This included signaling through MAdCAM-1 in the presence of Retinoic Acid (RA) and TGF-β. This combination of stimuli primed naïve CD4+ T cells to adopt a TRM phenotype. However, to fully differentiate into TRMs an additional soluble factor provided by memory T cells was required. Our results identified IL-6 as one of the key factors that induces the expression of TRM -associated markers, including CD69, CD103 and CCR5. This unique combination of stimuli promoted TRM differentiation despite low level proliferation. TRM differentiation was mediated through JAK/STAT signaling, and antagonists that target JAK/STAT pathways suppressed MAdCAM-1 mediated TRM cell formation. Our findings revealed that MAdCAM-1 works together with TGF-β, RA and IL-6 in this process. Such information may aid in the design of next generation adjuvants and effective mucosal vaccines. Additionally, each of these factors may be targeted to treat excessive gut inflammation associated with conditions like inflammatory bowel disease. Overall, these findings provide new strategies aimed at modulating immune responses to invading pathogens and identify therapeutic approaches toward regulating gut inflammation.

Immunologists and vaccinologists have long been interested in strategies aimed at boosting immune responses in mucosal tissues where pathogens are first encountered. Gut Tissue resident memory T cells (TRMs) play a central role in gut homeostasis and immunity. They provide a rapid long-lasting protection against pathogens. TRMs must target harmful pathogens and at the same time tolerate harmless commensal bacteria. This balance between immunity and tolerance in the complex environment of gut tissues is essential to the maintenance of gut homeostasis. In this study we have identified key factors present in the gut tissue milieu that are involved in TRM differentiation from naïve T cells. These findings point to new therapeutic approaches that can potentially target immune responses in gut tissues and may help in developing effective mucosal vaccines. Conversely, these factors may be targeted in excessive gut inflammation involved in conditions like inflammatory bowel disease (IBD).

## Linked entities

- **Proteins:** IL6 (interleukin 6), CD69 (CD69 molecule), ITGAE (integrin subunit alpha E), CCR5 (C-C motif chemokine receptor 5), MADCAM1 (mucosal vascular addressin cell adhesion molecule 1), TGFB1 (transforming growth factor beta 1)
- **Diseases:** inflammatory bowel disease (MONDO:0005265), IBD (MONDO:0005265)

## Full-text entities

- **Genes:** CD69 (CD69 molecule) [NCBI Gene 969] {aka AIM, BL-AC/P26, CLEC2C, EA1, GP32/28, MLR-3}, Stat1 (signal transducer and activator of transcription 1) [NCBI Gene 20846] {aka 2010005J02Rik}, MADCAM1 (mucosal vascular addressin cell adhesion molecule 1) [NCBI Gene 8174] {aka MACAM1}, IFNB1 (interferon beta 1) [NCBI Gene 3456] {aka IFB, IFF, IFN-beta, IFNB}, VCAM1 (vascular cell adhesion molecule 1) [NCBI Gene 7412] {aka CD106, INCAM-100}, TGFB1 (transforming growth factor beta 1) [NCBI Gene 7040] {aka CAEND1, CED, DPD1, IBDIMDE, LAP, TGF-beta1}, IFNG (interferon gamma) [NCBI Gene 3458] {aka IFG, IFI, IMD69}, IL7 (interleukin 7) [NCBI Gene 3574] {aka IL-7, IMD130}, CD28 (CD28 molecule) [NCBI Gene 940] {aka IMD123, Tp44}, CD4 (CD4 molecule) [NCBI Gene 920] {aka CD4mut, IMD79, Leu-3, OKT4D, T4}, PTPRC (protein tyrosine phosphatase receptor type C) [NCBI Gene 5788] {aka B220, CD45, CD45R, GP180, IMD105, L-CA}, Madcam1 (mucosal vascular addressin cell adhesion molecule 1) [NCBI Gene 17123] {aka MAdCAM-1}, ITGAE (integrin subunit alpha E) [NCBI Gene 3682] {aka CD103, HUMINAE}, Ifnb1 (interferon beta 1, fibroblast) [NCBI Gene 15977] {aka IFN-beta, IFNB, If1da1, Ifb}, IL6 (interleukin 6) [NCBI Gene 3569] {aka BSF-2, BSF2, CDF, HGF, HSF, IFN-beta-2}, CD8A (CD8 subunit alpha) [NCBI Gene 925] {aka CD8, CD8alpha, IMD116, Leu2, p32}, IL6R (interleukin 6 receptor) [NCBI Gene 3570] {aka CD126, HIES5, IL-1Ra, IL-6R, IL-6R-1, IL-6RA}, Cd69 (CD69 antigen) [NCBI Gene 12515] {aka 5830438K24Rik, AIM, VEA}, S1PR1 (sphingosine-1-phosphate receptor 1) [NCBI Gene 1901] {aka CD363, CHEDG1, D1S3362, ECGF1, EDG-1, EDG1}, Itgae (integrin alpha E, epithelial-associated) [NCBI Gene 16407] {aka A530055J10, CD103, aM290, alpha-E1, alpha-M290}, CDH1 (cadherin 1) [NCBI Gene 999] {aka Arc-1, BCDS1, CD324, CDHE, ECAD, LCAM}, IL10 (interleukin 10) [NCBI Gene 3586] {aka CSIF, GVHDS, IL-10, IL10A, TGIF}, Il6 (interleukin 6) [NCBI Gene 16193] {aka Il-6}, IL6ST (interleukin 6 cytokine family signal transducer) [NCBI Gene 3572] {aka CD130, CDW130, GP130, HIES4, HIES4A, HIES4B}, TNF (tumor necrosis factor) [NCBI Gene 7124] {aka DIF, IMD127, TNF-alpha, TNFA, TNFSF2, TNLG1F}, CCR5 (C-C motif chemokine receptor 5) [NCBI Gene 1234] {aka CC-CKR-5, CCCKR5, CCR-5, CD195, CKR-5, CKR5}, Stat2 (signal transducer and activator of transcription 2) [NCBI Gene 20847] {aka 1600010G07Rik}, CCR9 (C-C motif chemokine receptor 9) [NCBI Gene 10803] {aka CC-CKR-9, CDw199, GPR-9-6, GPR28}, Stat3 (signal transducer and activator of transcription 3) [NCBI Gene 20848] {aka 1110034C02Rik, Aprf}, Tgfb1 (transforming growth factor, beta 1) [NCBI Gene 21803] {aka TGF-beta1, TGFbeta1, Tgfb, Tgfb-1}, Cd4 (CD4 antigen) [NCBI Gene 12504] {aka L3T4, Ly-4}
- **Diseases:** proinflammatory cytokines (MESH:D000080424), acute infection (MESH:D000208), TRM (MESH:D001260), IBD (MESH:D015212), infection (MESH:D007239), GI (MESH:D006470), HIV infection (MESH:D015658), GI inflammation (MESH:D007249), Infectious Diseases (MESH:D003141), GI disorders (MESH:D006474), cancer (MESH:D009369)
- **Chemicals:** CFSE (MESH:C087165), EDTA (MESH:D004492), AZD 1480 (MESH:C545606), SDS (MESH:D012967), Triton X-100 (MESH:D017830), OKT3 (MESH:D016853), vitamin A (MESH:D014801), L-glutamine (MESH:D005973), galunisertib (MESH:C557799), vedolizumab (MESH:C543529), streptomycin (MESH:D013307), Far Red (-), Tocilizumab (MESH:C502936), Glycine (MESH:D005998), DTT (MESH:D004229), NaCl (MESH:D012965), RA (MESH:D014212), Ruxolitinib (MESH:C540383), carbon dioxide (MESH:D002245), penicillin (MESH:D010406), PBS (MESH:D007854)
- **Species:** Homo sapiens (human, species) [taxon 9606], Human immunodeficiency virus 1 (no rank) [taxon 11676], Mus musculus (house mouse, species) [taxon 10090]

## Full text

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## Figures

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## References

58 references — full list in the complete paper: https://tomesphere.com/paper/PMC13012526/full.md

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Source: https://tomesphere.com/paper/PMC13012526