# Live-cell 3D-SIM of Rift Valley fever virus NSs filaments reveals a polygon web architecture

**Authors:** James I. Dunlop, Peter A. Thomason, Leo M. Carlin, Benjamin G. Davis, Stephen D. Carter

PMC · DOI: 10.1073/pnas.2534404123 · Proceedings of the National Academy of Sciences of the United States of America · 2026-03-16

## TL;DR

This study uses advanced imaging to reveal the 3D structure of virus protein filaments in live cells, showing they form a complex web rather than simple lines.

## Contribution

The use of genetic-code expansion and live-cell 3D-SIM to visualize RVFV NSs filaments in real time with superresolution.

## Key findings

- NSs filaments form a micron-scale polygon web with distinct domains in live-cell nuclei.
- Fixed-cell experiments confirmed the polygon web structure of NSs filaments.
- The polygon architecture supports structural plasticity and functional importance during infection.

## Abstract

A defining feature of Rift Valley fever virus (RVFV) is the incorporation of the NSs protein into large filamentous assemblies inside infected nuclei [R. Swanepoel, N. K. Blackburn, J. Gen. Virol.
34, 557–561 (1977).], as judged from fixed specimens. To gain insight into the 3D structure of NSs filaments within live-cell nuclei, we used genetic-code expansion (GCE) to incorporate trans-cyclooct-2-en-L-lysine into the protein. This enabled site-specific fluorescent labeling with tetrazine dyes for live-cell structured illumination microscopy (SIM). Our superresolved images revealed the complete native architecture of NSs filaments as a micron-scale polygon web of fibers with discrete domain characteristics, overturning previous assumptions of simple linear filaments. Parallel experiments on fixed RVFV-infected cells confirmed that native NSs filaments also display this morphology. Overall, our 3D-SIM analysis reveals distinct structural plasticity within NSs filaments, establishing a quantitative structure–function relationship that support the importance of polygon organization for NSs filament function during RVFV infection.

## Linked entities

- **Proteins:** NSs (non-structural protein)
- **Chemicals:** trans-cyclooct-2-en-L-lysine (PubChem CID 123819318)
- **Diseases:** Rift Valley fever (MONDO:0017880)

## Full-text entities

- **Genes:** NSs [NCBI Gene 9538292], ERCC2 (ERCC excision repair 2, TFIIH core complex helicase subunit) [NCBI Gene 2068] {aka COFS2, CXPD, EM9, TFIIH, TTD, TTD1}, EIF2AK2 (eukaryotic translation initiation factor 2 alpha kinase 2) [NCBI Gene 5610] {aka PKR, PPP1R83, PRKR}, FBXO3 (F-box protein 3) [NCBI Gene 26273] {aka FBA, FBX3}
- **Diseases:** infection (MESH:D007239)
- **Chemicals:** GCE (-), Alexa Fluor  488 (MESH:C000711379), Pyl (MESH:C456839)
- **Species:** Rift Valley fever virus (no rank) [taxon 11588], Methanosarcina mazei (species) [taxon 2209]
- **Mutations:** P82L
- **Cell lines:** VeroE6 — Chlorocebus sabaeus (Green monkey), Spontaneously immortalized cell line (CVCL_0574), HEK-293 T — Homo sapiens (Human), Transformed cell line (CVCL_0063), HeLa — Homo sapiens (Human), Human papillomavirus-related endocervical adenocarcinoma, Cancer cell line (CVCL_0030), S127 — Mus musculus (Mouse), Hybridoma (CVCL_J741), HEK — Homo sapiens (Human), Transformed cell line (CVCL_0045)

## Full text

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## Figures

2 figures with captions in the complete paper: https://tomesphere.com/paper/PMC13012112/full.md

## References

15 references — full list in the complete paper: https://tomesphere.com/paper/PMC13012112/full.md

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Source: https://tomesphere.com/paper/PMC13012112