# DNA-PK interacts with cyclic dinucleotides and inhibits type I interferon responses

**Authors:** Isabelle K. Vila, Yasmine Messaoud-Nacer, Clara Taffoni, Jane Jardine, Roger J. Eloiflin, Adeline Augereau, Soumyabrata Guha, Moritz Schussler, Pierre Le Hars, Joe McKellar, Tamara Carvalho, Jeanne Postal, Morgane Chemarin, Joanna Re, Florence Guivel-Benhassine, Raphaëlle Lopez, Kilian Trillet, Jennifer Barrat, Maximin Serbier, Insaf El Mansouri, Charlotte Luchsinger, George P. Chrousos, Françoise Porrot, Felipe Diaz-Griffero, Olivier Schwartz, Fabien P. Blanchet, Karim Majzoub, Nicolas Bidère, Dimitrios Vlachakis, Nadine Laguette

PMC · DOI: 10.1084/jem.20251796 · The Journal of Experimental Medicine · 2026-03-24

## TL;DR

This study reveals that DNA-PKcs interacts with cyclic dinucleotides, regulating their signaling and inhibiting interferon responses.

## Contribution

DNA-PKcs is identified as a novel regulator of CDN signaling and is shown to be inhibited by CDNs.

## Key findings

- DNA-PKcs interacts with 2′3′-cGAMP and 3′3′-cGAMP to temper STING activation.
- CDNs inhibit DNA-PKcs kinase activity, affecting antiviral responses.
- DNA-PKcs impacts the bioactivity of STING agonists.

## Abstract

CDN are second messengers that trigger type I IFN responses. Vila et al. show that DNA-PKcs, a major DNA damage response actor, directly interacts with CDNs through its kinase domain, ensuring CDN-associated signal termination, while CDNs inhibit DNA-PKcs catalytic activity.

Inflammatory signal termination is critical for the maintenance of homeostasis. Cyclic dinucleotides (CDNs) are second messengers that trigger inflammatory responses through the activation of the stimulator of IFN genes (STING) signaling platform. No broad-acting direct regulator of intracellular CDNs has been identified in mammals to date. We show that the DNA-dependent protein kinase catalytic subunit (DNA-PKcs), a major DNA damage response actor, directly interacts with the intracellular 2′3′-cGAMP CDN through its kinase domain, tempering STING activation. DNA-PKcs also acts on the 3′3′-cGAMP bacterial CDN and pharmacological STING agonists, impacting their bioactivity and ability to mount optimal antiviral responses. STING agonism has been considered as a therapeutic avenue to alleviate immunosuppression in human pathologies. By uncovering DNA-PKcs as a CDN signaling modulator and CDNs as inhibitors of DNA-PKcs kinase activity, we provide critical insights into CDN regulation, with implications for the development of STING-targeting therapeutics.

## Linked entities

- **Genes:** PRKDC (protein kinase, DNA-activated, catalytic subunit) [NCBI Gene 5591], STING1 (stimulator of interferon response cGAMP interactor 1) [NCBI Gene 340061]
- **Proteins:** PRKDC (protein kinase, DNA-activated, catalytic subunit), STING1 (stimulator of interferon response cGAMP interactor 1)
- **Chemicals:** 2′3′-cGAMP (PubChem CID 135564529), 3′3′-cGAMP (PubChem CID 135471108)

## Full-text entities

- **Genes:** TNF (tumor necrosis factor) [NCBI Gene 7124] {aka DIF, IMD127, TNF-alpha, TNFA, TNFSF2, TNLG1F}, CD14 (CD14 molecule) [NCBI Gene 929], CD68 (CD68 molecule) [NCBI Gene 968] {aka GP110, LAMP4, SCARD1}, PRKDC (protein kinase, DNA-activated, catalytic subunit) [NCBI Gene 5591] {aka DNA-PKC, DNA-PKcs, DNAPK, DNAPKc, DNPK1, HYRC}, SERPINA1 (serpin family A member 1) [NCBI Gene 5265] {aka A1A, A1AT, AAT, PI, PI1, PRO2275}, IFNA1 (interferon alpha 1) [NCBI Gene 3439] {aka IFL, IFN, IFN-ALPHA, IFN-alphaD, IFNA13, IFNA@}, CSF1 (colony stimulating factor 1) [NCBI Gene 1435] {aka CSF-1, MCSF, PG-M-CSF}, Hprt1 (hypoxanthine phosphoribosyltransferase 1) [NCBI Gene 15452] {aka HPGRT, Hprt}, Gapdh (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 14433] {aka Gapd}, XRCC5 (X-ray repair cross complementing 5) [NCBI Gene 7520] {aka KARP-1, KARP1, KU80, KUB2, Ku86, NFIV}, ATM (ATM serine/threonine kinase) [NCBI Gene 472] {aka AT1, ATA, ATC, ATD, ATDC, ATE}, XRCC6 (X-ray repair cross complementing 6) [NCBI Gene 2547] {aka CTC75, CTCBF, G22P1, KU70, ML8, TLAA}, Hsp84-3 (heat shock protein, 3) [NCBI Gene 104434] {aka 84kDa, Hsp90, hsp3}, CGAS (cyclic GMP-AMP synthase) [NCBI Gene 115004] {aka C6orf150, D4, MB21D1, h-cGAS}, ERVK-10 (endogenous retrovirus group K member 10) [NCBI Gene 100616101] {aka PR, Protease, Proteinase}, IFIT2 (interferon induced protein with tetratricopeptide repeats 2) [NCBI Gene 3433] {aka G10P2, GARG-39, IFI-54, IFI-54K, IFI54, IFIT-2}, Ifnar1 (interferon (alpha and beta) receptor 1) [NCBI Gene 15975] {aka Ifar, Ifnar, Ifrc, Infar}, Sting1 (stimulator of interferon response cGAMP interactor 1) [NCBI Gene 72512] {aka 2610307O08Rik, ERIS, MPYS, Mita, STING, STING-beta}, CCL5 (C-C motif chemokine ligand 5) [NCBI Gene 6352] {aka D17S136E, RANTES, SCYA5, SIS-delta, SISd, TCP228}, Prkdc (protein kinase, DNA activated, catalytic polypeptide) [NCBI Gene 19090] {aka DNA-PKcs, DNAPDcs, DNAPK, DNPK1, DOXNPH, HYRC1}, STING1 (stimulator of interferon response cGAMP interactor 1) [NCBI Gene 340061] {aka ERIS, MITA, MPYS, NET23, SAVI, STING}, ISG15 (ISG15 ubiquitin like modifier) [NCBI Gene 9636] {aka G1P2, IFI15, IMD38, IP17, UCRP, hUCRP}, Cxcl10 (C-X-C motif chemokine ligand 10) [NCBI Gene 15945] {aka C7, CRG-2, INP10, IP-10, IP10, Ifi10}, IL6 (interleukin 6) [NCBI Gene 3569] {aka BSF-2, BSF2, CDF, HGF, HSF, IFN-beta-2}, TBK1 (TANK binding kinase 1) [NCBI Gene 29110] {aka AIARV, FTDALS4, IIAE8, NAK, T2K}, CXCL10 (C-X-C motif chemokine ligand 10) [NCBI Gene 3627] {aka C7, IFI10, INP10, IP-10, SCYB10, crg-2}, IRF3 (interferon regulatory factor 3) [NCBI Gene 3661] {aka IIAE7}, IFNB1 (interferon beta 1) [NCBI Gene 3456] {aka IFB, IFF, IFN-beta, IFNB}, HSP90AA1 (heat shock protein 90 alpha family class A member 1) [NCBI Gene 3320] {aka EL52, HEL-S-65p, HSP86, HSP89A, HSP90A, HSP90N}, ATR (ATR checkpoint kinase) [NCBI Gene 545] {aka FCTCS, FRP1, MEC1, SCKL, SCKL1}, NT5C (5', 3'-nucleotidase, cytosolic) [NCBI Gene 30833] {aka DNT, DNT1, HEL74, P5N2, PN-I, PN-II}, IFIT1 (interferon induced protein with tetratricopeptide repeats 1) [NCBI Gene 3434] {aka C56, G10P1, IFI-56, IFI-56K, IFI56, IFIT-1}, Actb (actin, beta) [NCBI Gene 11461] {aka Actx, E430023M04Rik, beta-actin}, IFNAR1 (interferon alpha and beta receptor subunit 1) [NCBI Gene 3454] {aka AVP, CRF2-1, IFN-R-1, IFN-alpha-REC, IFNAR, IFNBR}, CSF2 (colony stimulating factor 2) [NCBI Gene 1437] {aka CSF, GMCSF}
- **Diseases:** cancer (MESH:D009369), tissue (MESH:D017695), viral (MESH:D014777), autoinflammatory diseases (MESH:D056660), DNA repair (MESH:D049914), Inflammatory (MESH:D007249), CDNs (MESH:C536899), infection (MESH:D007239), immune dysfunction (MESH:D007154)
- **Chemicals:** DMSO (MESH:D004121), penicillin (MESH:D010406), ADU-S100 (MESH:C000723773), Amino Acids (MESH:D000596), PBS (MESH:D007854), formaldehyde (MESH:D005557), calcium phosphate (MESH:C020243), AZD7648 (MESH:C000705750), Laemmli buffer (MESH:C088816), DTT (MESH:D004229), Water (MESH:D014867), polyacrylamide (MESH:C016679), NaCl (MESH:D012965), puromycin (MESH:D011691), nitrogen (MESH:D009584), NU7026 (MESH:C479235), NU7441 (MESH:C499693), CO2 (MESH:D002245), Tween (MESH:D011136), ATP (MESH:D000255), Triton X-100 (MESH:D017830), KCl (MESH:D011189), acid (MESH:D000143), Lipofectamine 2000 (MESH:C086724), L-glutamine (MESH:D005973), streptomycin (MESH:D013307), HAQ (MESH:C020182), hydrogen (MESH:D006859), Sepharose (MESH:D012685), ACK (-), TRIzol (MESH:C411644), EDTA (MESH:D004492), glycerol (MESH:D005990), biotin (MESH:D001710), Alexa Fluor 488 (MESH:C000711379), c-diAMP (MESH:C528998), HEPES (MESH:D006531), PFA (MESH:C003043), DAPI (MESH:C007293), SDS (MESH:D012967), MgCl2 (MESH:D015636)
- **Species:** Human alphaherpesvirus 1 (Herpes simplex virus type 1, no rank) [taxon 10298], Monkeypox virus (no rank) [taxon 10244], Escherichia coli (E. coli, species) [taxon 562], Vesicular stomatitis virus (species) [taxon 11276], Mus musculus (house mouse, species) [taxon 10090], Chlorocebus aethiops (African green monkey, species) [taxon 9534], Homo sapiens (human, species) [taxon 9606]
- **Mutations:** N153S, R232H
- **Cell lines:** NIH-3T3 — Mus musculus (Mouse), Spontaneously immortalized cell line (CVCL_0594), THP-1gDNA — Homo sapiens (Human), Childhood acute monocytic leukemia, Cancer cell line (CVCL_0006), RAW264.7 — Mus musculus (Mouse), Mouse leukemia, Cancer cell line (CVCL_0493), THP-1CTRL — Homo sapiens (Human), Induced pluripotent stem cell (CVCL_WN11), BHK21 — Mesocricetus auratus (Golden hamster), Spontaneously immortalized cell line (CVCL_RQ70), THP-1 — Homo sapiens (Human), Childhood acute monocytic leukemia, Cancer cell line (CVCL_A8AI), THP-1STING — Homo sapiens (Human), Childhood acute monocytic leukemia, Cancer cell line (CVCL_B1AK), HEK293TCTRL — Homo sapiens (Human), Transformed cell line (CVCL_0045), T98G — Homo sapiens (Human), Glioblastoma, Cancer cell line (CVCL_0556), C57BL/6J — Mus musculus (Mouse), Transformed cell line (CVCL_C0MW), S2 — Drosophila melanogaster (Fruit fly), Spontaneously immortalized cell line (CVCL_Z232), T98GSTING — Homo sapiens (Human), Glioblastoma, Cancer cell line (CVCL_B368), Vero E6 — Chlorocebus sabaeus (Green monkey), Spontaneously immortalized cell line (CVCL_0574), 293T — Homo sapiens (Human), Transformed cell line (CVCL_0063), Vero — Chlorocebus sabaeus (Green monkey), Spontaneously immortalized cell line (CVCL_0059), FLAG — Homo sapiens (Human), Induced pluripotent stem cell (CVCL_C0IU), MEFs — Mus musculus (Mouse), Finite cell line (CVCL_9115), siKU70 — Mus musculus (Mouse), Mouse melanoma, Cancer cell line (CVCL_F940)

## Full text

_Full body text omitted from this summary view._ Fetch the complete paper as Markdown: https://tomesphere.com/paper/PMC13011919/full.md

## Figures

10 figures with captions in the complete paper: https://tomesphere.com/paper/PMC13011919/full.md

## References

43 references — full list in the complete paper: https://tomesphere.com/paper/PMC13011919/full.md

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Source: https://tomesphere.com/paper/PMC13011919