# Alternative splicing in voltage-gated sodium channels: mechanisms, regulatory networks and therapeutic implications

**Authors:** Jiaying Qiu, Pei Wu, Yalin Zhang, Yiqing Li, Chunli Xia, Siwan Peng, Junjie Sun

PMC · DOI: 10.1080/07853890.2026.2645735 · 2026-03-23

## TL;DR

Alternative splicing in sodium channels expands their function, and correcting splicing defects could treat related diseases.

## Contribution

This review systematically catalogs splicing variants in all nine VGSC α-subunits and evaluates their clinical and functional impacts.

## Key findings

- Alternative splicing significantly expands the proteomic and functional diversity of voltage-gated sodium channels.
- Dysregulation of splicing contributes to channelopathies, and antisense oligonucleotides offer a promising therapeutic strategy.
- RNA-binding proteins like Rbfox and Nova2 regulate splicing events in a cell-type-specific manner.

## Abstract

Voltage-gated sodium channels (VGSCs) are fundamental to electrical signalling in excitable cells, and their dysfunction underlies a wide range of channelopathies. While the existence of nine distinct α-subunit genes contributes to VGSC diversity, alternative splicing serves as a significant post-transcriptional mechanism that profoundly expands their proteomic and functional repertoire. Dysregulation of this splicing process is increasingly linked to disease pathogenesis.

This review aims to provide a comprehensive synthesis of the alternative splicing landscape across all nine VGSC α-subunits. It systematically catalogs known splicing variants, details their roles in developmental regulation, tissue-specific expression and fine-tuning of channel biophysics, and examines the regulatory networks controlling these events.

We detail conserved splicing switches (e.g. the 5N/5A exon in neuronal channels) and isoform-specific events across the VGSC family (Nav1.1 to Nav1.9), evaluating their functional and clinical impacts. The regulation of these events by key RNA-binding proteins (RBPs), such as Rbfox and Nova2, within cell-type-specific networks is emphasized. Furthermore, we discuss how splicing dysregulation contributes to channelopathies and evaluate the promising potential of novel therapeutic strategies, particularly antisense oligonucleotides (ASOs), to correct pathogenic splicing defects.

By integrating mechanistic insights with clinical implications, this review establishes alternative splicing as a central theme in VGSC biology and pathophysiology. It highlights the critical need for, and the emerging path towards, precision medicine approaches that target splicing defects for the treatment of VGSC-associated disorders, providing a foundational resource to guide future research and therapeutic development.

Alternative splicing critically expands the functional diversity of voltage-gated sodium channels (VGSCs).Dysregulation of this splicing process is a direct cause of disease, contributing to various channelopathies.Correcting pathogenic splicing defects, notably via antisense oligonucleotides (ASOs), represents a promising precision therapeutic strategy.

Alternative splicing critically expands the functional diversity of voltage-gated sodium channels (VGSCs).

Dysregulation of this splicing process is a direct cause of disease, contributing to various channelopathies.

Correcting pathogenic splicing defects, notably via antisense oligonucleotides (ASOs), represents a promising precision therapeutic strategy.

## Linked entities

- **Genes:** SCN1A (sodium voltage-gated channel alpha subunit 1) [NCBI Gene 6323], SCN2A (sodium voltage-gated channel alpha subunit 2) [NCBI Gene 6326], SCN3A (sodium voltage-gated channel alpha subunit 3) [NCBI Gene 6328], SCN4A (sodium voltage-gated channel alpha subunit 4) [NCBI Gene 6329], SCN5A (sodium voltage-gated channel alpha subunit 5) [NCBI Gene 6331], SCN8A (sodium voltage-gated channel alpha subunit 8) [NCBI Gene 6334], SCN9A (sodium voltage-gated channel alpha subunit 9) [NCBI Gene 6335], SCN10A (sodium voltage-gated channel alpha subunit 10) [NCBI Gene 6336], SCN11A (sodium voltage-gated channel alpha subunit 11) [NCBI Gene 11280]
- **Proteins:** NOVA2 (NOVA alternative splicing regulator 2)

## Full-text entities

- **Genes:** Rnaseh1 (ribonuclease H1) [NCBI Gene 19819], SMN2 (survival of motor neuron 2, centromeric) [NCBI Gene 6607] {aka BCD541, C-BCD541, GEMIN1, SMNC, TDRD16B}, Scn5a (sodium channel, voltage-gated, type V, alpha) [NCBI Gene 20271] {aka Nav1.5, Nav1.5c, SkM1, SkM2, mH1}, RBFOX2 (RNA binding fox-1 homolog 2) [NCBI Gene 23543] {aka FOX2, Fox-2, HNRBP2, HRNBP2, RBM9, RTA}, SCN7A (sodium voltage-gated channel alpha subunit 7) [NCBI Gene 6332] {aka NaG, Nav2.1, Nav2.2, SCN6A}, RBFOX1 (RNA binding fox-1 homolog 1) [NCBI Gene 54715] {aka 2BP1, A2BP1, FOX-1, FOX1, HRNBP1}, Scn8a (sodium channel, voltage-gated, type VIII, alpha) [NCBI Gene 20273] {aka C630029C19Rik, NaCh6, Nav1.6, dmu, med, mnd-2}, SLC9A1 (solute carrier family 9 member A1) [NCBI Gene 6548] {aka APNH, LIKNS, NHE-1, NHE1, PPP1R143}, SCN11A (sodium voltage-gated channel alpha subunit 11) [NCBI Gene 11280] {aka FEPS3, HSAN7, NAV1.9, NaN, PN5, SCN12A}, Scnm1 (sodium channel modifier 1) [NCBI Gene 69269] {aka 3110001I17Rik, Scnm1-ps}, Scn2a (sodium channel, voltage-gated, type II, alpha) [NCBI Gene 110876] {aka 6430408L10, A230052E19Rik, Nav1.2, Scn2a1}, CAV1 (caveolin 1) [NCBI Gene 857] {aka BSCL3, CGL3, LCCNS, MSTP085, PPH3, VIP21}, NOVA2 (NOVA alternative splicing regulator 2) [NCBI Gene 4858] {aka ANOVA, NEDASB, NOVA-2, NOVA3}, CTSS (cathepsin S) [NCBI Gene 1520], Rbfox1 (RNA binding protein, fox-1 homolog (C. elegans) 1) [NCBI Gene 268859] {aka A2bp, A2bp1, Hrnbp1, fox-1}, SCN10A (sodium voltage-gated channel alpha subunit 10) [NCBI Gene 6336] {aka FEPS2, Nav1.8, PN3, SNS}, HLA-A (major histocompatibility complex, class I, A) [NCBI Gene 3105] {aka HLAA}, SCN8A (sodium voltage-gated channel alpha subunit 8) [NCBI Gene 6334] {aka BFIS5, CERIII, CIAT, DEE13, EIEE13, MED}, Nova2 (NOVA alternative splicing regulator 2) [NCBI Gene 384569] {aka Gm1424}, SCNM1 (sodium channel modifier 1) [NCBI Gene 79005] {aka OFD19}, SCN1A (sodium voltage-gated channel alpha subunit 1) [NCBI Gene 6323] {aka DEE6, DEE6A, DEE6B, DRVT, EIEE6, FEB3}, SCN2A (sodium voltage-gated channel alpha subunit 2) [NCBI Gene 6326] {aka BFIC3, BFIS3, BFNIS, DEE11, EA9, EIEE11}, Rbfox2 (RNA binding protein, fox-1 homolog (C. elegans) 2) [NCBI Gene 93686] {aka Fbm2, Fxh, Hrnbp2, Rbm9}, SCN9A (sodium voltage-gated channel alpha subunit 9) [NCBI Gene 6335] {aka ETHA, FEB3B, GEFSP7, HSAN2D, NE-NA, NENA}, RNASEH1 (ribonuclease H1) [NCBI Gene 246243] {aka H1RNA, PEOB2, RNH1}, Hnrnph2 (heterogeneous nuclear ribonucleoprotein H2) [NCBI Gene 56258] {aka DXHXS1271E, Ftp-3, Ftp3, H', HNRNP, Hnrph2}, SCN5A (sodium voltage-gated channel alpha subunit 5) [NCBI Gene 6331] {aka CDCD2, CMD1E, CMPD2, HB1, HB2, HBBD}, CTTN (cortactin) [NCBI Gene 2017] {aka EMS1}, Scn1a (sodium channel, voltage-gated, type I, alpha) [NCBI Gene 20265] {aka B230332M13, Nav1.1}, SCN3A (sodium voltage-gated channel alpha subunit 3) [NCBI Gene 6328] {aka DEE62, EIEE62, FFEVF4, NAC3, Nav1.3}
- **Diseases:** arrhythmias (MESH:D001145), seizure (MESH:D012640), myotonias (MESH:D009222), VGSC disorders (MESH:C538353), breast and prostate cancers (MESH:D001943), neurological deficits (MESH:D009461), VGSC (MESH:D020513), DI (MESH:C564703), cancer (MESH:D009369), encephalopathies (MESH:D001927), hyperexcitable disorders (MESH:D009358), autism spectrum disorders (MESH:D000067877), ataxia (MESH:D001259), Dravet (MESH:D004831), colon cancer (MESH:D015179), febrile seizures (MESH:D003294), peripheral nerve injury (MESH:D059348), channelopathies (MESH:D053447), cognitive impairment (MESH:D003072), cytotoxicity (MESH:D064420), pain (MESH:D010146), intellectual disability (MESH:D008607), epilepsies (MESH:D004827), breast, prostate, cervical and colon cancers (MESH:D011471), metastasis (MESH:D009362), dizziness (MESH:D004244), VGSC-associated disorders (MESH:D017096), neurodevelopmental disorders (MESH:D002658), neuropathic pain (MESH:D009437), spinal muscular atrophy (MESH:D009134), SUDEP (MESH:D000080485)
- **Chemicals:** carbamazepine (MESH:D002220), Na+ (MESH:D012964), risdiplam (MESH:C000629884), lipid (MESH:D008055), phenytoin (MESH:D010672), nusinersen (MESH:C000590926), lamotrigine (MESH:D000077213), GalNAc3 (-), TTX (MESH:D013779), calcium (MESH:D002118), ASO (MESH:D016376)
- **Species:** Rattus norvegicus (brown rat, species) [taxon 10116], Homo sapiens (human, species) [taxon 9606], Mus musculus (house mouse, species) [taxon 10090]
- **Mutations:** R1882Q, D209N, glutamine residue at position 1030, glutamine at position 1077, IVS5-91 G > A, serine/arginine

## Figures

2 figures with captions in the complete paper: https://tomesphere.com/paper/PMC13011093/full.md

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Source: https://tomesphere.com/paper/PMC13011093