# Short and Long Non-Coding RNAs in Renal Cell Carcinoma

**Authors:** Monia Cecati, Valentina Pozzi, Valentina Schiavoni, Giuseppina Barrasso, Veronica Pompei, Daniela Marzioni, Nicoletta Bonci, Stefania Fumarola, Andrea Ballini, Davide Sartini, Roberto Campagna

PMC · DOI: 10.3390/ncrna12020008 · 2026-02-27

## TL;DR

This review explores how non-coding RNAs influence kidney cancer development, progression, and treatment resistance, offering insights into their roles and potential as biomarkers or therapeutic targets.

## Contribution

The paper highlights novel mechanistic roles of non-coding RNAs in regulating tumor behavior and resistance to therapies in renal cell carcinoma.

## Key findings

- Non-coding RNAs modulate pathways like ferroptosis, autophagy, and immune evasion in RCC.
- ncRNA-based signatures can distinguish RCC subtypes and serve as non-invasive biomarkers.
- ncRNAs contribute to resistance against targeted therapies through regulatory networks and intercellular communication.

## Abstract

Renal cell carcinoma (RCC) represents the most frequent kidney malignancy and remains a major clinical challenge due to its often silent onset, high metastatic potential, and limited responsiveness to conventional chemotherapy. Increasing evidence indicates that non-coding RNAs (ncRNAs), including microRNAs (miRNAs), long non-coding RNAs (lncRNAs), and circular RNAs (circRNAs), are key regulators of RCC tumorigenesis, progression, and therapy resistance. Rather than providing a purely descriptive overview, this review focuses on emerging mechanistic paradigms through which ncRNAs actively shape tumor behavior and therapeutic response in RCC. This review summarizes current knowledge on the biological and clinical relevance of ncRNAs in RCC, highlighting their dual roles as oncogenic drivers or tumor suppressors through the modulation of pathways involved in proliferation, apoptosis, angiogenesis, invasion, immune evasion, metabolic reprogramming, and ferroptosis. Particular emphasis is placed on mechanistically defined ncRNA regulatory axes controlling ferroptosis, autophagy, metabolic reprogramming, and immune escape, as well as on ncRNA-mediated intercellular communication via extracellular vesicles, which promotes the dissemination of resistance to targeted therapies. The review also addresses ncRNA-based diagnostic and prognostic applications, including miRNA signatures capable of discriminating RCC subtypes and circulating ncRNAs as minimally invasive biomarkers. Moreover, the manuscript discusses ncRNA-mediated mechanisms of resistance to targeted therapies such as sunitinib, sorafenib, and axitinib, emphasizing regulatory networks involving miRNA targets, lncRNA–miRNA sponging, RNA-binding proteins, extracellular vesicle transfer, and epigenetic modulation. Emerging therapeutic opportunities are also addressed, including strategies aimed at inhibiting oncogenic ncRNAs or restoring tumor-suppressive ncRNAs to enhance drug sensitivity and improve patient stratification.

## Linked entities

- **Chemicals:** sunitinib (PubChem CID 5329102), sorafenib (PubChem CID 216239), axitinib (PubChem CID 3086685)
- **Diseases:** renal cell carcinoma (MONDO:0005086)

## Full-text entities

- **Genes:** ACO1 (aconitase 1) [NCBI Gene 48] {aka ACONS, HEL60, IREB1, IREBP, IREBP1, IRP1}, Pcna (proliferating cell nuclear antigen) [NCBI Gene 18538], TP53INP2 (tumor protein p53 inducible nuclear protein 2) [NCBI Gene 58476] {aka C20orf110, DOR, PINH, dJ1181N3.1}, SNHG16 (small nucleolar RNA host gene 16) [NCBI Gene 100507246] {aka ELNAT1, Nbla10727, Nbla12061, ncRAN}, MIR210 (microRNA 210) [NCBI Gene 406992] {aka MIRN210, mir-210}, IL6 (interleukin 6) [NCBI Gene 3569] {aka BSF-2, BSF2, CDF, HGF, HSF, IFN-beta-2}, MIR215 (microRNA 215) [NCBI Gene 406997] {aka MIRN215, miRNA215, mir-215}, AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207] {aka AKT, PKB, PKB-ALPHA, PRKBA, RAC, RAC-ALPHA}, ABCC1 (ATP binding cassette subfamily C member 1 (ABCC1 blood group)) [NCBI Gene 4363] {aka ABC29, ABCC, DFNA77, GS-X, MRP, MRP1}, ATG14 (autophagy related 14) [NCBI Gene 22863] {aka ATG14L, BARKOR, KIAA0831}, MIR24-1 (microRNA 24-1) [NCBI Gene 407012] {aka MIR189, MIRN24-1, miR-24-1, miRNA24-1}, MIR424 (microRNA 424) [NCBI Gene 494336] {aka MIR322, MIRN424, hsa-mir-424, miRNA424, mir-424}, PVT1 (Pvt1 oncogene) [NCBI Gene 5820] {aka LINC00079, MIR1204HG, NCRNA00079, TP53LC09, onco-lncRNA-100}, AR (androgen receptor) [NCBI Gene 367] {aka AIS, AR8, DHTR, HPCX3, HUMARA, HYSP1}, BAP1 (BRCA1 associated deubiquitinase 1) [NCBI Gene 8314] {aka HUCEP-13, KURIS, TPDS1, UBM2, UCHL2, UVM2}, AXL (AXL receptor tyrosine kinase) [NCBI Gene 558] {aka ARK, AXL3, JTK11, Tyro7, UFO}, GSTM2 (glutathione S-transferase mu 2) [NCBI Gene 2946] {aka GST4, GSTM, GSTM2-2, GTHMUS}, Mmp9 (matrix metallopeptidase 9) [NCBI Gene 17395] {aka B/MMP9, Clg4b, Gel B, MMP-9, pro-MMP-9}, PTBP1 (polypyrimidine tract binding protein 1) [NCBI Gene 5725] {aka HNRNP-I, HNRNPI, HNRPI, PTB, PTB-1, PTB-T}, HEY1 (hes related family bHLH transcription factor with YRPW motif 1) [NCBI Gene 23462] {aka BHLHb31, CHF2, HERP2, HESR1, HRT-1, NERP2}, MIR23B (microRNA 23b) [NCBI Gene 407011] {aka MIRN23B, hsa-mir-23b, miRNA23B, mir-23b}, CCR4 (C-C motif chemokine receptor 4) [NCBI Gene 1233] {aka CC-CKR-4, CD194, CKR4, CMKBR4, ChemR13, HGCN:14099}, Ctnnb1 (catenin beta 1) [NCBI Gene 12387] {aka Bfc, Catnb, Mesc}, Egfr (epidermal growth factor receptor) [NCBI Gene 24329] {aka ERBB1, ErbB-1, Errp}, MIR149 (microRNA 149) [NCBI Gene 406941] {aka MIRN149, mir-149}, RRM1 (ribonucleotide reductase catalytic subunit M1) [NCBI Gene 6240] {aka PEOB6, R1, RIR1, RR1}, NUSAP1 (nucleolar and spindle associated protein 1) [NCBI Gene 51203] {aka ANKT, BM037, LNP, NUSAP, PRO0310p1, Q0310}, SLIT2 (slit guidance ligand 2) [NCBI Gene 9353] {aka SLIL3, Slit-2}, SETD2 (SET domain containing 2, histone lysine methyltransferase) [NCBI Gene 29072] {aka HBP231, HIF-1, HIP-1, HSPC069, HYPB, KMT3A}, TEX41 (testis expressed 41) [NCBI Gene 401014] {aka DKFZp686O1327, LINC00953}, MEG3 (maternally expressed 3) [NCBI Gene 55384] {aka FP504, GTL2, LINC00023, Lnc-DLK1-35, NCRNA00023, PRO0518}, SNHG12 (small nucleolar RNA host gene 12) [NCBI Gene 85028] {aka ASLNC04080, C1orf79, LINC00100, LINC001000, NCRNA00100, PNAS-123}, DHFR (dihydrofolate reductase) [NCBI Gene 1719] {aka DHFR1, DYR}, Mki67 (antigen identified by monoclonal antibody Ki 67) [NCBI Gene 17345] {aka D630048A14Rik, Ki-67, Ki67}, MIR506 (microRNA 506) [NCBI Gene 574511] {aka MIRN506, hsa-mir-506, mir-506}, Asap1 (ArfGAP with SH3 domain, ankyrin repeat and PH domain1) [NCBI Gene 13196] {aka DEF-1, Ddef1, PAP, mKIAA1249, s19}, LINC00645 (long intergenic non-protein coding RNA 645) [NCBI Gene 100505967], MIR625 (microRNA 625) [NCBI Gene 693210] {aka MIRN625, hsa-mir-625}, MIR335 (microRNA 335) [NCBI Gene 442904] {aka MIRN335, hsa-mir-335, miRNA335, mir-335}, WNT2 (Wnt family member 2) [NCBI Gene 7472] {aka INT1L1, IRP}, MIR139 (microRNA 139) [NCBI Gene 406931] {aka MIR139-3p, MIRN139, mir-139}, ERBB2 (erb-b2 receptor tyrosine kinase 2) [NCBI Gene 2064] {aka CD340, HER-2, HER-2/neu, HER2, MLN 19, MLN-19}, HOTAIR (HOX transcript antisense RNA) [NCBI Gene 100124700] {aka HOXAS, HOXC-AS4, HOXC11-AS1, NCRNA00072}, BAK1 (BCL2 antagonist/killer 1) [NCBI Gene 578] {aka BAK, BAK-LIKE, BCL2L7, CDN1}, CASP3 (caspase 3) [NCBI Gene 836] {aka CPP32, CPP32B, SCA-1}, DUSP10 (dual specificity phosphatase 10) [NCBI Gene 11221] {aka MKP-5, MKP5}, BECN1 (beclin 1) [NCBI Gene 8678] {aka ATG6, VPS30, beclin1}, E2F1 (E2F transcription factor 1) [NCBI Gene 1869] {aka E2F-1, RBAP1, RBBP3, RBP3}, MIR126 (microRNA 126) [NCBI Gene 406913] {aka MIRN126, miRNA126, mir-126}, MIR1265 (microRNA 1265) [NCBI Gene 100302116] {aka MIRN1265, hsa-mir-1265}, PLIN3 (perilipin 3) [NCBI Gene 10226] {aka M6PRBP1, PP17, TIP47}, MIR769 (microRNA 769) [NCBI Gene 768217] {aka MIRN769, hsa-mir-769, mir-769}, CAPNS1 (calpain small subunit 1) [NCBI Gene 826] {aka CALPAIN4, CANP, CANPS, CAPN4, CDPS, CSS1}, THBS1 (thrombospondin 1) [NCBI Gene 7057] {aka THBS, THBS-1, TSP, TSP-1, TSP1}, MIR584 (microRNA 584) [NCBI Gene 693169] {aka MIRN584, hsa-mir-584}, WTAP (WT1 associated protein) [NCBI Gene 9589] {aka Mum2}, MALAT1 (metastasis associated lung adenocarcinoma transcript 1) [NCBI Gene 378938] {aka HCN, LINC00047, NCRNA00047, NEAT2, PRO2853, miPEP-52}, MTOR (mechanistic target of rapamycin kinase) [NCBI Gene 2475] {aka FRAP, FRAP1, FRAP2, RAFT1, RAPT1, SKS}, MIR1293 (microRNA 1293) [NCBI Gene 100302220] {aka MIRN1293, hsa-mir-1293, mir-1293}, IFI6 (interferon alpha inducible protein 6) [NCBI Gene 2537] {aka 6-16, FAM14C, G1P3, IFI-6-16, IFI616}
- **Diseases:** tumorigenesis (MESH:D063646), obesity (MESH:D009765), leukemia (MESH:D007938), Cancer (MESH:D009369), VHL tumor (MESH:D006623), glioblastoma (MESH:D005909), hypoxia (MESH:D000860), lung metastasis (MESH:D009362), HLRCC (MESH:C535516), prostate cancer (MESH:D011471), injury to (MESH:D014947), FH-deficient (MESH:C538191), multiple myeloma (MESH:D009101), chronic lymphocytic leukemia (MESH:D015451), pancreatic cancer (MESH:D010190), pre-B cell lymphoma (MESH:D016393), acute lymphoblastic leukemia (MESH:D054198), colon cancer (MESH:D015179), lung squamous cell carcinoma (MESH:D002294), oncocytoma (MESH:D018249), osteosarcoma (MESH:D012516), RCC (MESH:D002292), breast, lung, gastric and bladder cancer (MESH:D013274), hepatocellular carcinoma (MESH:D006528), lymphoma (MESH:D008223), chromophobe tumors (MESH:D000238), metastatic disease (MESH:D000092182), breast cancer (MESH:D001943), toxicity (MESH:D064420), hypertension (MESH:D006973), kidney cancer (MESH:D007680), non-small cell lung cancer (MESH:D002289)
- **Chemicals:** glutamine (MESH:D005973), acid (MESH:D000143), paclitaxel (MESH:D017239), Tomudex (MESH:C068874), methotrexate (MESH:D008727), paraffin (MESH:D010232), Fe2+ (-), ROS (MESH:D017382), axitinib (MESH:D000077784), Y-27632 (MESH:C108830), formalin (MESH:D005557), CB-839 (MESH:C000593334), cisplatin (MESH:D002945), AS1411 (MESH:C513936), tyrosine (MESH:D014443), lipid (MESH:D008055), glucose (MESH:D005947), sorafenib (MESH:D000077157), DOX (MESH:D004317), fumarate (MESH:D005650), sunitinib (MESH:D000077210), 5-fluorouracil (MESH:D005472), gemcitabine (MESH:D000093542), LNA (MESH:C477371), ICI 182,780 (MESH:D000077267), oligonucleotides (MESH:D009841), alcohol (MESH:D000438), DT (MESH:D013936)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606]
- **Cell lines:** 786-O — Homo sapiens (Human), Renal cell carcinoma, Cancer cell line (CVCL_1051), UOK262 — Homo sapiens (Human), Hereditary leiomyomatosis and renal cell carcinoma, Cancer cell line (CVCL_1D72), Caki-2 — Homo sapiens (Human), Papillary renal cell carcinoma, Cancer cell line (CVCL_0235), Caki-1 — Homo sapiens (Human), Clear cell renal cell carcinoma, Cancer cell line (CVCL_0234), ACHN — Homo sapiens (Human), Papillary renal cell carcinoma, Cancer cell line (CVCL_1067)

## Figures

1 figure with captions in the complete paper: https://tomesphere.com/paper/PMC13010606/full.md

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Source: https://tomesphere.com/paper/PMC13010606