# Enzyme-Targeted Antiproliferative Effects of Novel Indole–Acrylamide Xenobiotics Acting on Cyclooxygenase Pathways

**Authors:** Mohammed Hawash, Benay Mahmutoğlu, Murad Abualhasan, Deniz Cansen Kahraman, Sultan Nacak Baytas

PMC · DOI: 10.3390/jox16020047 · 2026-03-04

## TL;DR

Scientists designed new indole-based compounds that strongly inhibit COX-2 enzymes and show promise in fighting liver and breast cancers.

## Contribution

New indole-acrylamide compounds with strong COX-2 inhibition and antiproliferative effects against cancer cells are developed and tested.

## Key findings

- Compound 6a showed COX-2 selectivity with an IC50 of 128 nM and strong antiproliferative effects.
- Compound 6c inhibited COX-2 with an IC50 of 0.215 µM and showed efficacy against breast and melanoma cancers.
- Molecular docking of 6a showed strong COX-2 binding energy, comparable to celecoxib.

## Abstract

The indole scaffold is common in natural products and bioactive compounds, including anti-cancer and anti-inflammatory medicines. In this work, a series of indole-acrylamide derivatives was synthesized, and their antiproliferative and anti-inflammatory effects were evaluated on COX enzymes and against a panel of cancer cell lines. All the final compounds were characterized via HRMS and (1H & 13C)-NMR. Anticancer and anti-inflammatory activities were evaluated using standard biomedical techniques by SRB, MTS, and COX kit assays. Additionally, the molecular docking analysis was conducted using the AutoDock Vina tool. The results demonstrated that the produced compounds displayed significant inhibitory effects on the COX-2 enzyme, with IC50 values of 128 nM to 1.04 µM. 6a demonstrated significant COX-2 selectivity with an IC50 of 128 nM and an SI of 352, highlighting its preference for COX-2 over COX-1. 6c exhibited potent COX-2 inhibition with an IC50 of 0.215 µM and an SI of 10.6. The assessed compounds exhibited substantial cytotoxic effects on cancer cells, especially against liver cancer cell lines (Huh7, HepG2, Mahlavu, and SNU475), and breast cancer (MCF-7). 6d compound was the most COX-1 selective inhibitor, which observed potent activity against hepatocellular carcinoma, with IC50 values as low as 3.5 µM, and was highly effective against MCF-7. Additionally, COX-2 selective inhibitors, 6a and 6b, exhibited strong antiproliferative effects against both breast cancer (MCF-7) and melanoma (B16F1), with IC50 values ranging from 4.75 to 15.4 µM. Furthermore, the molecular docking of 6a demonstrated a strong affinity for the COX-2 enzyme, with energy scores (S) of −8.392 kcal/mol, comparable to celecoxib’s score of −10.96 kcal/mol. The findings suggest a possible correlation between COX-2 inhibition and anticancer efficacy, especially for compounds 6a and 6c, which demonstrate excellent COX-2 selectivity and notable antiproliferative effects, positioning them as prospective candidates for further advancement in cancer treatment.

## Linked entities

- **Proteins:** COX2 (cytochrome c oxidase subunit II), COX1 (cytochrome c oxidase subunit I)
- **Chemicals:** celecoxib (PubChem CID 2662)
- **Diseases:** liver cancer (MONDO:0002691), breast cancer (MONDO:0004989), hepatocellular carcinoma (MONDO:0007256), melanoma (MONDO:0005105)

## Full-text entities

- **Genes:** COX2 (cytochrome c oxidase subunit II) [NCBI Gene 17709], COX8A (cytochrome c oxidase subunit 8A) [NCBI Gene 1351] {aka COX, COX8, COX8-2, COX8L, MC4DN15, VIII}, ST2 (suppression of tumorigenicity 2) [NCBI Gene 6761], COX1 (cytochrome c oxidase subunit I) [NCBI Gene 4512] {aka COI, MTCO1}, COX2 (cytochrome c oxidase subunit II) [NCBI Gene 4513] {aka COII, MTCO2}, CCL2 (C-C motif chemokine ligand 2) [NCBI Gene 6347] {aka GDCF-2, HC11, HSMCR30, MCAF, MCP-1, MCP1}, COX1 (cytochrome c oxidase subunit I) [NCBI Gene 26195] {aka COI}, IL17C (interleukin 17C) [NCBI Gene 27189] {aka CX2, IL-17C}, Ptgs2 (prostaglandin-endoperoxide synthase 2) [NCBI Gene 29527] {aka COX-2, Cox2, PGHS-2, PHS II, Pghs2}
- **Diseases:** melanoma (MESH:D008545), injury to (MESH:D014947), adenocarcinoma (MESH:D000230), Cancer (MESH:D009369), lung cancer (MESH:D008175), carcinogenesis (MESH:D063646), adenomas (MESH:D000236), metastasis (MESH:D009362), tumorigenic (MESH:D002471), HCC (MESH:D006528), Cytotoxicity (MESH:D064420), breast and bladder cancer (MESH:D001943), cardiovascular adverse (MESH:D002318), Inflammation (MESH:D007249), ovarian and specific colorectal malignancies (MESH:D010051), CRC (MESH:D015179)
- **Chemicals:** sodium hydride (MESH:C524957), n-Hexane (MESH:C026385), aldehyde (MESH:D000447), EDCI (MESH:D005022), Methyl iodide (MESH:C014055), 1H (-), Streptomycin (MESH:D013307), celecoxib (MESH:D000068579), prostaglandin (MESH:D011453), H (MESH:D006859), indomethacin (MESH:D007213), 13C (MESH:C000615229), ethyl acetate (MESH:C007650), pyrazole (MESH:C031280), amino acids (MESH:D000596), aspirin (MESH:D001241), acrylamide (MESH:D020106), l-glutamine (MESH:D005973), SRB (MESH:C022027), DMSO (MESH:D004121), Penicillin (MESH:D010406), O (MESH:D010100), 3H (MESH:D014316), NaH (MESH:C025451), C (MESH:D002244), Methanol (MESH:D000432), vincristine (MESH:D014750), CO2 (MESH:D002245), acetic acid (MESH:D019342), Acrylate (MESH:C036658), EDC (MESH:C024565), LiOH (MESH:C028467), HCl (MESH:D006851), alkaloids (MESH:D000470), PGE2 (MESH:D015232), azoxymethane (MESH:D001397), isoxazole (MESH:D007555), silica gel (MESH:D058428), THF (MESH:C018674), H-6 (MESH:C003027), Sorafenib (MESH:D000077157), NaCl (MESH:D012965), ethyl ester (MESH:C465446), tyrosine (MESH:D014443), benzyl bromide (MESH:C038682), Indole (MESH:C030374), 5-fluorouracil (MESH:D005472), alkene (MESH:D000475), mofezolac (MESH:C054999), trichloroacetic acid (MESH:D014238), water (MESH:D014867), 2H (MESH:D003903)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Rattus norvegicus (brown rat, species) [taxon 10116], Homo sapiens (human, species) [taxon 9606]
- **Cell lines:** CRL-6323 — Sigmodon hispidus (Hispid cotton rat), Spontaneously immortalized cell line (CVCL_YD58), Huh7 — Homo sapiens (Human), Adult hepatocellular carcinoma, Cancer cell line (CVCL_0336), Mahlavu — Homo sapiens (Human), Hepatocellular carcinoma, Cancer cell line (CVCL_0405), B16-F1 — Mus musculus (Mouse), Mouse melanoma, Cancer cell line (CVCL_0158), MDA-MB-435 — Homo sapiens (Human), Amelanotic melanoma, Cancer cell line (CVCL_0417), COLO205 — Homo sapiens (Human), Colon adenocarcinoma, Cancer cell line (CVCL_0218), ATCC-CCL-247 — Mus musculus (Mouse), Undefined cell line type (CVCL_M023), CRL-3519 — Homo sapiens (Human), Transformed cell line (CVCL_4Y88), HEK 293T — Homo sapiens (Human), Transformed cell line (CVCL_0063), SNU475 — Homo sapiens (Human), Adult hepatocellular carcinoma, Cancer cell line (CVCL_0497), St.1 — Homo sapiens (Human), Gastric adenocarcinoma, Cancer cell line (CVCL_L498), MCF-7 — Homo sapiens (Human), Invasive breast carcinoma of no special type, Cancer cell line (CVCL_0031), HCT116 — Homo sapiens (Human), Colon carcinoma, Cancer cell line (CVCL_0291), CRL-2102 — Homo sapiens (Human), Transformed cell line (CVCL_K864), CaCo-2 — Homo sapiens (Human), Colon adenocarcinoma, Cancer cell line (CVCL_0025), ATCC-HB-8064 — Homo sapiens (Human), Lung adenocarcinoma, Cancer cell line (CVCL_0023), ATCC HTB-22 — Mus musculus (Mouse), Hybridoma (CVCL_A8FQ), JCRB0403 — Homo sapiens (Human), Finite cell line (CVCL_2E35), Hep3B — Homo sapiens (Human), Childhood hepatocellular carcinoma, Cancer cell line (CVCL_0326), HeLa — Homo sapiens (Human), Human papillomavirus-related endocervical adenocarcinoma, Cancer cell line (CVCL_0030), ATCC-CRL-2236 — Homo sapiens (Human), Transformed cell line (CVCL_9J35), HepG2 — Homo sapiens (Human), Hepatoblastoma, Cancer cell line (CVCL_0027)

## Figures

8 figures with captions in the complete paper: https://tomesphere.com/paper/PMC13010604/full.md

---
Source: https://tomesphere.com/paper/PMC13010604