# KLF2 controls thymic epithelial cell homeostasis, impacting regulatory T cell development and immune tolerance

**Authors:** Pedro Ferreirinha, Pedro M. Rodrigues, Francisco Sobral, Bruno Cavadas, Nuno L. Alves

PMC · DOI: 10.1016/j.isci.2026.115161 · 2026-03-03

## TL;DR

The paper shows that the KLF2 gene is crucial for maintaining thymic epithelial cells, which are important for developing regulatory T cells and preventing autoimmunity.

## Contribution

The study reveals KLF2 as a novel regulator of thymic epithelial cell homeostasis and immune tolerance.

## Key findings

- KLF2 deficiency disrupts medullary thymic epithelial cell homeostasis and diversity.
- Loss of KLF2 impairs regulatory T cell development and function.
- KLF2 deficiency increases the risk of immune tolerance breakdown.

## Abstract

T cell development depends on specialized thymic microenvironments formed by cortical (c) and medullary (m) thymic epithelial cells (TECs), which arise from a common epithelial progenitor. However, the molecular mechanisms that govern TEC differentiation and function remain poorly understood. Particularly, mTECs display remarkable functional heterogeneity driven by complex genetic programs essential for central tolerance. Here, we investigated the role of the transcription factor KLF2 in TEC biology. TEC-specific deletion of KLF2 (KLF2 cKO) in mice impairs mTEC maintenance and selectively remodels transcriptional programs across cTEC and mTEC subsets, including several recently identified mimetic TECs. These perturbations imprint sustained thymic dysfunction and restrict regulatory T cell differentiation and function. Furthermore, KLF2 cKO mice show increased lymphocytic infiltration in peripheral tissues in aged and autoimmune-prone models, suggesting an increased susceptibility to the breakdown of immunological self-tolerance. Our findings highlight KLF2 as a critical regulator of TEC homeostasis and the prevention of autoimmunity.

•KLF2 deficiency disrupts medullary thymic epithelial cell homeostasis and diversity•Loss of KLF2 impairs regulatory T cell development and function•KLF2 deficiency increases the risk of immune tolerance breakdown

KLF2 deficiency disrupts medullary thymic epithelial cell homeostasis and diversity

Loss of KLF2 impairs regulatory T cell development and function

KLF2 deficiency increases the risk of immune tolerance breakdown

Biological sciences

## Linked entities

- **Genes:** KLF2 (KLF transcription factor 2) [NCBI Gene 10365]
- **Species:** Mus musculus (taxon 10090)

## Full-text entities

- **Genes:** Klf2 (Kruppel-like transcription factor 2 (lung)) [NCBI Gene 16598] {aka Lklf}
- **Diseases:** TEC (MESH:C536980), autoimmune (MESH:D001327), thymic dysfunction (MESH:D013953)
- **Species:** Mus musculus (house mouse, species) [taxon 10090]

## Figures

5 figures with captions in the complete paper: https://tomesphere.com/paper/PMC13010103/full.md

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Source: https://tomesphere.com/paper/PMC13010103