# Emerging co-occurrence of mcr-10 and broad-spectrum β-lactamase genes in Enterobacterales from surface waters in Brazil

**Authors:** Rafael da Silva Rosa, João Pedro Rueda Furlan, Lucas David Rodrigues dos Santos, Micaela Santana Ramos, Eduardo Angelino Savazzi, Eliana Guedes Stehling

PMC · DOI: 10.1007/s10661-026-15180-w · 2026-03-23

## TL;DR

This study reports the first occurrence of mcr-10 and broad-spectrum β-lactamase genes in Brazilian waterborne bacteria, signaling a new environmental antimicrobial resistance trend.

## Contribution

The first report of mcr-10 gene in Brazil and its co-occurrence with β-lactamase genes in Enterobacterales from surface waters.

## Key findings

- 14 bacterial strains (E. coli and K. pneumoniae) were found to carry the mcr-10 gene and resistance to cephalosporins or carbapenems.
- Two novel multireplicon plasmids were identified in a Klebsiella quasipneumoniae strain.
- The study highlights the early dissemination of mcr-10 in Brazil's environmental sector.

## Abstract

Aquatic ecosystems play a key role in the spread of antimicrobial resistance genes (ARGs), especially mcr-type and β-lactamase genes. The occurrence of β-lactamases and the mcr-10 genes has emerged among Enterobacterales species across the world; however, this phenomenon had never been reported in Brazil until now. We performed a surveillance study focusing on the spread of the mcr-type genes in WHO critical bacterial priority pathogens isolated from aquatic ecosystems. For this, 132 surface water samples from rivers and streams were collected between 2021 and 2023 and studied, and 492 bacterial strains were obtained. Accordingly, 14 strains (11 Escherichia coli and three Klebsiella pneumoniae species complex) resistant to third-generation cephalosporins or carbapenems were identified as harboring the mcr-10 gene. These strains belonged to international, unusual, and novel clones. In addition, several ARGs were detected, spotlighting ESBL- and carbapenemase-encoding genes, which confer resistance to clinically important antimicrobials. Most virulence genes and plasmid replicons were found, and two novel multireplicon plasmids were identified in a Klebsiella
quasipneumoniae strain. These findings highlight the first report of the mcr-10 gene in Brazil and the early dissemination throughout the environmental sector. Therefore, the identification of Enterobacterales strains co-producing mcr-10 and broad-spectrum-β-lactamase genes draws attention to a new trend in antimicrobial resistance mediated by critical pathogens in the environment.

The online version contains supplementary material available at 10.1007/s10661-026-15180-w.

## Linked entities

- **Genes:** mcr10 (ncRNA) [NCBI Gene 14515854]
- **Species:** Escherichia coli (taxon 562), Klebsiella pneumoniae (taxon 573), Klebsiella quasipneumoniae (taxon 1463165)

## Full-text entities

- **Genes:** iroN [NCBI Gene 3853509], blaKPC-2 [NCBI Gene 18983503], iutA [NCBI Gene 7324510], blaCTX-M-15 [NCBI Gene 9538104], ISs [NCBI Gene 20492777], blaTEM [NCBI Gene 13905334], iucA [NCBI Gene 5962075], Beta-Lactamase [NCBI Gene 7872529], blaCTX-M-14 [NCBI Gene 9720867], floR [NCBI Gene 13905643], cmlA [NCBI Gene 9846099], ESBL [NCBI Gene 13906541], hlyF [NCBI Gene 1446576], mrkD [NCBI Gene 5961997]
- **Diseases:** DSM 28212 (MESH:D001714), MDR (MESH:D018088), infection (MESH:D007239), ExPEC (MESH:D004927), AMR (MESH:D060467), KpSC (MESH:D007710)
- **Chemicals:** sul (MESH:D013449), aerobactin (MESH:C031819), sodium azide (MESH:D019810), cephalosporins (MESH:D002511), folate (MESH:D005492), ciprofloxacin (MESH:D002939), ertapenem (MESH:D000077727), aph (MESH:C054801), aminoglycosides (MESH:D000617), minocycline (MESH:D008911), piperacillin/tazobactam (MESH:D000077725), phenol (MESH:D019800), glyoxylate (MESH:C031150), imipenem (MESH:D015378), yersiniabactin (MESH:C104398), fluoroquinolone (MESH:D024841), tetracycline (MESH:D013752), aztreonam (MESH:D001398), metal (MESH:D008670), CPM (MESH:C037534), ammonia (MESH:D000641), aac (MESH:C017822), levofloxacin (MESH:D064704), copper (MESH:D003300), enterobactin (MESH:D004758), nitrogen (MESH:D009584), trimethoprim-sulfamethoxazole (MESH:D015662), gentamicin (MESH:D005839), aluminum (MESH:D000535), Water (MESH:D014867), phosphorus (MESH:D010758), STP (MESH:D004290), salmochelin (MESH:C000630262), allantoin (MESH:D000481), nitrate (MESH:D009566), meropenem (MESH:D000077731), ampicillin-sulbactam (MESH:C035444), MacConkey (-), ATM (MESH:C020809), streptomycin (MESH:D013307), amikacin (MESH:D000583), manganese (MESH:D008345), chloramphenicol (MESH:D002701), chloroform (MESH:D002725), oxygen (MESH:D010100), mercury (MESH:D008628), carbon (MESH:D002244), tet (MESH:D013754), nalidixic acid (MESH:D009268), trimethoprim (MESH:D014295), ceftriaxone (MESH:D002443), carbapenem (MESH:D015780), beta-lactam (MESH:D047090), fosfomycin (MESH:D005578), EDTA (MESH:D004492), amoxicillin-clavulanic acid (MESH:D019980), quinolones (MESH:D015363), cefepime (MESH:D000077723), CAZ (MESH:D002442)
- **Species:** Acinetobacter baumannii (species) [taxon 470], Canis lupus familiaris (dog, subspecies) [taxon 9615], Klebsiella quasipneumoniae subsp. similipneumoniae (subspecies) [taxon 1463164], Klebsiella quasipneumoniae (species) [taxon 1463165], Klebsiella pneumoniae (species) [taxon 573], Escherichia coli (E. coli, species) [taxon 562], Sus scrofa (pig, species) [taxon 9823], Felis catus (cat, species) [taxon 9685], Bos taurus (bovine, species) [taxon 9913], Enterobacterales (order) [taxon 91347], Escherichia coli J53 (strain) [taxon 1144303], Homo sapiens (human, species) [taxon 9606]
- **Mutations:** AA1358AA, S244T, A433V
- **Cell lines:** mcr-10.1 — Mus musculus (Mouse), Hybridoma (CVCL_C7HC), pEW1161 — Homo sapiens (Human), Ehlers-Danlos syndrome, Finite cell line (CVCL_AM62)

## Figures

3 figures with captions in the complete paper: https://tomesphere.com/paper/PMC13009061/full.md

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Source: https://tomesphere.com/paper/PMC13009061