# Mechanistic dissection of GRHL2 and PR transcriptional co-regulation in breast cells

**Authors:** Marleen T. Aarts, Anna Nordin, Claudio Cantù, Antonius L. van Boxtel, Renée van Amerongen

PMC · DOI: 10.1371/journal.pgen.1012088 · PLOS Genetics · 2026-03-17

## TL;DR

The study reveals how GRHL2 and the progesterone receptor work together to control gene activity in breast cells, using both direct interactions and DNA looping.

## Contribution

The novel discovery is that GRHL2 acts as a progesterone receptor co-regulator through chromatin binding and 3D genome architecture modification.

## Key findings

- GRHL2 interacts with the progesterone receptor independently of hormone stimulation.
- GRHL2 and the progesterone receptor bind to shared enhancer elements upon progesterone exposure.
- GRHL2 and progesterone receptor-bound elements connect through chromatin looping to regulate gene expression.

## Abstract

Gene expression is controlled by complex transcriptional networks in which transcription factors and their cognate enhancer elements integrate developmental and environmental cues. The progesterone receptor (PR), a hormone-activated transcription factor, is essential for breast development and physiology, yet how it engages with the chromatin and lineage-specific cofactors remains unclear. Using an unbiased approach, we identify the epithelial transcription factor grainyhead-like 2 (GRHL2) as a key co-regulator of PR activity in hormone responsive breast cancer cells. We show that GRHL2 interacts with PR in a progesterone-independent manner. Upon progesterone stimulation, GRHL2 and PR are both recruited to distal enhancer elements of target genes. Furthermore, GRHL2- and PR-bound elements connect spatially through chromatin looping to regulate shared targets. These findings uncover a previously unrecognized mechanism by which GRHL2 and PR coordinate gene regulation through both chromatin binding and 3D genome architecture modification, positioning GRHL2 as a crucial modulator of steroid hormone receptor function.

Gene expression is tightly controlled by regulatory networks in which transcription factors integrate developmental and environmental cues. Hormones are one important class of such signals. In breast tissue, the hormone progesterone is essential for normal development and function. Progesterone binds to its receptor, the progesterone receptor, a DNA-binding protein that regulates the activity of progesterone-responsive genes. However, whether and how the progesterone receptor collaborates with lineage-specific cofactors to control gene expression has remained incompletely understood. In this study, we identified GRHL2 as a key co-regulator of the progesterone receptor in hormone-responsive breast cancer cells. We found that these two proteins interact even in the absence of hormone stimulation. Upon progesterone exposure, both proteins are recruited to regulatory regions that control shared target genes. Importantly, we demonstrate that these regulatory regions physically connect through long-range DNA looping, enabling coordinated gene expression. Together, our findings provide new insight into hormone-driven gene regulation and highlight GRHL2 as an important contributor to progesterone receptor function in breast cells.

## Linked entities

- **Genes:** GRHL2 (grainyhead like transcription factor 2) [NCBI Gene 79977], PGR (progesterone receptor) [NCBI Gene 5241]
- **Proteins:** GRHL2 (grainyhead like transcription factor 2)
- **Chemicals:** progesterone (PubChem CID 5994)
- **Diseases:** breast cancer (MONDO:0004989)

## Full-text entities

- **Genes:** NR3C2 (nuclear receptor subfamily 3 group C member 2) [NCBI Gene 4306] {aka MCR, MLR, MR, NR3C2VIT}, STAT1 (signal transducer and activator of transcription 1) [NCBI Gene 6772] {aka CANDF7, IMD31A, IMD31B, IMD31C, ISGF-3, STAT91}, GATA3 (GATA binding protein 3) [NCBI Gene 2625] {aka HDR, HDRS}, IGFBP5 (insulin like growth factor binding protein 5) [NCBI Gene 3488] {aka IBP5}, LGR5 (leucine rich repeat containing G protein-coupled receptor 5) [NCBI Gene 8549] {aka FEX, GPR49, GPR67, GRP49, HG38}, SMARCC2 (SWI/SNF related BAF chromatin remodeling complex subunit C2) [NCBI Gene 6601] {aka BAF170, CRACC2, CSS8, Rsc8}, GRHL3 (grainyhead like transcription factor 3) [NCBI Gene 57822] {aka SOM, TFCP2L4, VWS2}, GRHL1 (grainyhead like transcription factor 1) [NCBI Gene 29841] {aka LBP32, MGR, NH32, TFCP2L2}, ESR1 (estrogen receptor 1) [NCBI Gene 2099] {aka ER, ESR, ESRA, ESTRR, Era, NR3A1}, FOXA1 (forkhead box A1) [NCBI Gene 3169] {aka HNF3A, TCF3A}, CTCF (CCCTC-binding factor) [NCBI Gene 10664] {aka CFAP108, FAP108, MRD21}, BLNK (B cell linker) [NCBI Gene 29760] {aka AGM4, BASH, BLNK-S, LY57, SLP-65, SLP65}, CCNB1 (cyclin B1) [NCBI Gene 891] {aka CCNB}, AR (androgen receptor) [NCBI Gene 367] {aka AIS, AR8, DHTR, HPCX3, HUMARA, HYSP1}, EREG (epiregulin) [NCBI Gene 2069] {aka EPR, ER, Ep}, CTBP1 (C-terminal binding protein 1) [NCBI Gene 1487] {aka BARS, HADDTS}, PHF6 (PHD finger protein 6) [NCBI Gene 84295] {aka BFLS, BORJ, CENP-31}, PGR (progesterone receptor) [NCBI Gene 5241] {aka NR3C3, PR}, GRHL2 (grainyhead like transcription factor 2) [NCBI Gene 79977] {aka BOM, DFNA28, ECTDS, PPCD4, TFCP2L3}, NR3C1 (nuclear receptor subfamily 3 group C member 1) [NCBI Gene 2908] {aka GCCR, GCR, GCRST, GR, GRL}, TRPS1 (transcriptional repressor GATA binding 1) [NCBI Gene 7227] {aka GC79, LGCR}, TAB2 (TGF-beta activated kinase 1 (MAP3K7) binding protein 2) [NCBI Gene 23118] {aka CHTD2, MAP3K7IP2, TAB-2}, MTA2 (metastasis associated 1 family member 2) [NCBI Gene 9219] {aka MTA1L1, PID}, YWHAZ (tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta) [NCBI Gene 7534] {aka 14-3-3-zeta, HEL-S-3, HEL-S-93, HEL4, KCIP-1, POPCHAS}, STAT3 (signal transducer and activator of transcription 3) [NCBI Gene 6774] {aka ADMIO, ADMIO1, APRF, HIES}, RB1 (RB transcriptional corepressor 1) [NCBI Gene 5925] {aka OSRC, PPP1R130, RB, p105-Rb, p110-RB1, pRb}, ARF6 (ARF GTPase 6) [NCBI Gene 382], S100A6 (S100 calcium binding protein A6) [NCBI Gene 6277] {aka 2A9, 5B10, CABP, CACY, PRA, S10A6}, CHD3 (chromodomain helicase DNA binding protein 3) [NCBI Gene 1107] {aka Mi-2a, Mi2-ALPHA, SNIBCPS, ZFH}, SMARCD2 (SWI/SNF related BAF chromatin remodeling complex subunit D2) [NCBI Gene 6603] {aka BAF60B, CRACD2, PRO2451, Rsc6p, SGD2}, RAD21 (RAD21 cohesin complex component) [NCBI Gene 5885] {aka CDLS4, HR21, HRAD21, MCD1, MGS, NXP1}, STAT6 (signal transducer and activator of transcription 6) [NCBI Gene 6778] {aka D12S1644, HIES6, IL-4-STAT, STAT6B, STAT6C}, TGFB2 (transforming growth factor beta 2) [NCBI Gene 7042] {aka CAEND2, G-TSF, LDS4, TGF-beta2}
- **Diseases:** Breast Cancer (MESH:D001943), cancer (MESH:D009369), breast (MESH:D061325), prostate cancer (MESH:D011471), RIME (MESH:D003866)
- **Chemicals:** Laemmli buffer (MESH:C088816), Glycine (MESH:D005998), Urea (MESH:D014508), puromycin (MESH:D011691), NaCl (MESH:D012965), digitonin (MESH:D004072), R5020 (MESH:D011397), Tween-20 (MESH:D011136), KOH (MESH:C029943), TBS (MESH:D013725), PBS (MESH:D007854), cysteine (MESH:D003545), phenol (MESH:D019800), IRDye 800CW (MESH:C562366), formaldehyde (MESH:D005557), CaCl2 (MESH:D002122), LiCl (MESH:D018021), glycerol (MESH:D005990), EDTA (MESH:D004492), TRIzol (MESH:C411644), HEPES (MESH:D006531), spermidine (MESH:D013095), SDS (MESH:D012967), Charcoal (MESH:D002606), GlutaMAX (MESH:C054122), Progesterone (MESH:D011374), N-lauroylsarcosine (MESH:C025231), NP-40 (MESH:C010615), methionine (MESH:D008715), ethanol (MESH:D000431), Triton X-100 (MESH:D017830), KCl (MESH:D011189), chloroform (MESH:D002725), EGTA (MESH:D004533), isoamyl alcohol (MESH:C029683), sodium deoxycholate (MESH:D003840), DMEM (-), Poly(A) (MESH:D011061), polybrene (MESH:D006583)
- **Species:** Mycoplasma (genus) [taxon 2093], Homo sapiens (human, species) [taxon 9606]
- **Cell lines:** T47DS — Homo sapiens (Human), Invasive breast carcinoma of no special type, Cancer cell line (CVCL_3945), MCF7 — Homo sapiens (Human), Invasive breast carcinoma of no special type, Cancer cell line (CVCL_0031), shGRHL2 — Homo sapiens (Human), Breast adenocarcinoma, Cancer cell line (CVCL_A9BB), T47D — Homo sapiens (Human), Invasive breast carcinoma of no special type, Cancer cell line (CVCL_0553), HEK293TN — Homo sapiens (Human), Transformed cell line (CVCL_UL49)

## Full text

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## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC13008249/full.md

## References

91 references — full list in the complete paper: https://tomesphere.com/paper/PMC13008249/full.md

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Source: https://tomesphere.com/paper/PMC13008249