# An updated view on lagging strand DNA replication: implications for the replication stress response

**Authors:** Rodrigo Martín-Rufo, Emilio Lecona

PMC · DOI: 10.1080/15384101.2026.2646889 · Cell Cycle · 2026-03-22

## TL;DR

This paper explores how the lagging strand of DNA is replicated and how this process connects to the cell's response to replication stress.

## Contribution

The paper introduces a new model where the replication stress response monitors Okazaki fragment generation to control DNA replication.

## Key findings

- The lagging strand replication involves a semi-distributive priming model with Pol α/Pri.
- The replication stress response (RSR) is linked to lagging strand dynamics during normal S phase.
- The RSR modulates replication to prevent genomic instability and resource exhaustion.

## Abstract

The process of DNA replication is inherently asymmetric. While the leading strand is synthesized continuously, the lagging strand is copied in small fragments, the Okazaki fragments, requiring the repeated priming by the DNA polymerase alpha/Primase complex (Pol α/Pri). Current evidence is consistent with a semi-distributive model for priming in the lagging strand, as Pol α/Pri acts associated to the replisome and also as a free complex. In addition, there is a strong link between the dynamics of replication in the lagging strand and the basal activation of the replication stress response (RSR) during an unperturbed S phase. We hypothesize that the RSR monitors the generation of Okazaki fragments to control the synthesis of DNA in what we call the DNA replication control (DRC) mode of the RSR. The DRC enforces a gradual progression of DNA replication by restricting origin firing, what is necessary to establish the replication program in the cell and to prevent the appearance of genomic instability. Thus, the RSR coordinates the replication program in the cell, modulating the progression of DNA replication to prevent the exhaustion of cellular resources that would endanger the stability of the genome.

## Full-text entities

- **Genes:** TEN1 (Ten1p) [NCBI Gene 850696], LRR1 (leucine rich repeat protein 1) [NCBI Gene 122769] {aka 4-1BBLRR, LRR-1, PPIL5}, AAA1 (aortic aneurysm, familial abdominal 1) [NCBI Gene 100329167] {aka AAA}, RIF1 (replication timing regulatory factor 1) [NCBI Gene 55183], PRIM1 (DNA primase subunit 1) [NCBI Gene 5557] {aka PDIL, p49}, CUL2 (cullin 2) [NCBI Gene 8453], DONSON (DNA replication fork stabilization factor DONSON) [NCBI Gene 29980] {aka B17, C21orf60, MGORS10, MIMIS, MISSLA}, PCNA (proliferating cell nuclear antigen) [NCBI Gene 5111] {aka ATLD2}, CTF4 (chromatin-binding protein CTF4) [NCBI Gene 856254] {aka CHL15, POB1}, PTPA (protein phosphatase 2 phosphatase activator) [NCBI Gene 5524] {aka PARK25, PP2A, PPP2R4, PR53}, CLSPN (claspin) [NCBI Gene 63967], BLM (BLM RecQ like helicase) [NCBI Gene 641] {aka BS, MGRISCE1, RECQ2, RECQL2, RECQL3}, POLA2 (DNA polymerase alpha 2, accessory subunit) [NCBI Gene 23649], CHEK1 (checkpoint kinase 1) [NCBI Gene 1111] {aka CHK1, OZEMA21}, FOXM1 (forkhead box M1) [NCBI Gene 2305] {aka FKHL16, FOXM1A, FOXM1B, FOXM1C, HFH-11, HFH11}, CDT1 (chromatin licensing and DNA replication factor 1) [NCBI Gene 81620] {aka DUP, RIS2}, SMARCAL1 (SNF2 related chromatin remodeling annealing helicase 1) [NCBI Gene 50485] {aka HARP, HHARP}, CDC6 (cell division cycle 6) [NCBI Gene 990] {aka CDC18L, HsCDC18, HsCDC6, MGORS5}, SLD2 (Sld2p) [NCBI Gene 853752] {aka DRC1}, POT1 (acetyl-CoA C-acyltransferase) [NCBI Gene 854646] {aka FOX3, POX3}, WRN (WRN RecQ like helicase) [NCBI Gene 7486] {aka RECQ3, RECQL2, RECQL3}, DNA2 (DNA replication helicase/nuclease 2) [NCBI Gene 1763] {aka DNA2L, RTS4, hDNA2}, STN1 (Stn1p) [NCBI Gene 851655], CDK1 (cyclin dependent kinase 1) [NCBI Gene 983] {aka CDC2, CDC28A, P34CDC2}, VCP (valosin containing protein) [NCBI Gene 7415] {aka CDC48, FTDALS6, TERA, p97}, ATRIP (ATR interacting protein) [NCBI Gene 84126], HUS1 (HUS1 checkpoint clamp component) [NCBI Gene 3364] {aka hHUS1}, EXO1 (exonuclease 1) [NCBI Gene 9156] {aka HEX1, hExoI}, USP7 (ubiquitin specific peptidase 7) [NCBI Gene 7874] {aka C16DELp13.2, DEL16P13.2, HAFOUS, HAUSP, TEF1}, CDK2 (cyclin dependent kinase 2) [NCBI Gene 1017] {aka CDKN2, p33(CDK2)}, CHK1 (serine/threonine protein kinase CHK1) [NCBI Gene 852577], MCM3 (MCM DNA helicase complex subunit MCM3) [NCBI Gene 856680], FEN1 (flap structure-specific endonuclease 1) [NCBI Gene 2237] {aka FEN-1, MF1, RAD2}, RPA1 (replication protein A1) [NCBI Gene 6117] {aka HSSB, MST075, PFBMFT6, REPA1, RF-A, RP-A}, PRIMPOL (primase and DNA directed polymerase) [NCBI Gene 201973] {aka CCDC111, MYP22, Primpol1}, POLA1 (DNA polymerase alpha 1, catalytic subunit) [NCBI Gene 5422] {aka NSX, PDR, POLA, VEODS, p180}, MCM10 (minichromosome maintenance 10 replication initiation factor) [NCBI Gene 55388] {aka CNA43, DNA43, IMD80, PRO2249}, PPA1 (inorganic pyrophosphatase 1) [NCBI Gene 5464] {aka HEL-S-66p, IOPPP, PP, PP1, SID6-8061}, CDC45 (cell division cycle 45) [NCBI Gene 8318] {aka CDC45L, CDC45L2, MGORS7, PORC-PI-1}, SLX4 (SLX4 structure-specific endonuclease subunit) [NCBI Gene 84464] {aka BTBD12, FANCP, MUS312}, POLD1 (DNA polymerase delta 1, catalytic subunit) [NCBI Gene 5424] {aka CDC2, CRCS10, IMD120, MDPL, POLD}, CYT1 (ubiquinol--cytochrome-c reductase catalytic subunit CYT1) [NCBI Gene 854231] {aka CTC1, YOR29-16}, MYC (MYC proto-oncogene, bHLH transcription factor) [NCBI Gene 4609] {aka MRTL, MYCC, bHLHe39, c-Myc}, APE1 (metalloaminopeptidase APE1) [NCBI Gene 853758] {aka API, LAP4, YSC1}, CDC45 (DNA replication initiation factor CDC45) [NCBI Gene 850793] {aka SLD4}, FANCI (FA complementation group I) [NCBI Gene 55215] {aka KIAA1794}, FANCD2 (FA complementation group D2) [NCBI Gene 2177] {aka FA-D2, FA4, FACD, FAD, FAD2, FANCD}, RAD9A (RAD9 checkpoint clamp component A) [NCBI Gene 5883] {aka RAD9}, PIK3CB (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta) [NCBI Gene 5291] {aka P110BETA, PI3K, PI3KBETA, PIK3C1}, RAD1 (RAD1 checkpoint DNA exonuclease) [NCBI Gene 5810] {aka HRAD1, REC1}
- **Diseases:** RS (MESH:D000079225), Cancer (MESH:D009369), Seckel (MESH:C537533)
- **Chemicals:** RSR (-)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Xenopus laevis (African clawed frog, species) [taxon 8355], Homo sapiens (human, species) [taxon 9606], Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932]

## Full text

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## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC13007448/full.md

## References

132 references — full list in the complete paper: https://tomesphere.com/paper/PMC13007448/full.md

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Source: https://tomesphere.com/paper/PMC13007448