# The gut microbiota remodes amino acid and lipid metabolism in incomplete revascularization of CHD with phlegm-dampness syndrome: an integrated multiomics and network pharmacology study

**Authors:** Xinyu Zhang, Wei Jiang, Xiaoqing Li, Wenjing Xu, Tong Liu, Haiming Cao, Haining Zhao, Wenhua Shi, Taohua Lan, Weihui Lu

PMC · DOI: 10.3389/fmolb.2026.1748007 · Frontiers in Molecular Biosciences · 2026-03-09

## TL;DR

This study explores how gut bacteria and metabolism are linked in a specific heart disease syndrome, using traditional Chinese medicine and modern science.

## Contribution

The study integrates multiomics and network pharmacology to uncover gut microbiota and metabolic changes in IR-CHD with phlegm-dampness syndrome.

## Key findings

- IR-CHD patients with PD Syndrome show altered amino acid and lipid metabolism profiles.
- Specific gut bacteria like Muribaculum and Agathobacter are linked to metabolic changes in PD Syndrome.
- Potential biomarkers like 3-methyl-2-oxo-pentanoic acid were identified for PD Syndrome diagnosis.

## Abstract

Incomplete revascularization of coronary heart disease (IR-CHD) is a novel category of CHD that has developed; such patients often have persistent angina of unknown etiology, which seriously affects quality of life and prognosis and urgently needs in-depth study.

Taking IR-CHD patients with PD Syndrome, non-PD (NPD) Syndrome, and healthy individuals as research subjects, through the integration of microbiomics and metabolomics studies of clinical samples and the network pharmacology research strategy of three classic TCM formulae, we systematically explored the biological basis of TCM Syndrome differentiation for PD Syndromes of IR-CHD.

IR-CHD patients with PD Syndrome demonstrated a unique metabolic profile and gut microbiota structure characterized by an increase in branched-chain amino acid metabolism and a decrease in glycerophospholipid metabolism, and 6 Syndrome-specific differential metabolites (DMs) were identified. Additionally, combined analysis of the gut microbiota and metabolites revealed that differential gut microbiota (DGMs), including Muribaculum, Odoribacter, and Agathobacter, may be involved in metabolic disorders associated with amino acids and lipids in PD syndrome. Agathobacter, Odoribacter and 3-methyl-2-oxo-pentanoic acid might be potential biomarkers for PD Syndrome by ROC diagnostic analysis. Furthermore, a comprehensive network pharmacology and multiomics analysis suggested that PD Syndrome formulae regulation overlaps with the metabolic disorder pathway mediated by the gut microbiota in PD syndromes, that is, the PD Syndrome formula may regulate the intestinal microenvironment and improve metabolic disorders through the PD Syndrome-specific pathway in IR-CHD patients.

IR-CHD patients with PD TCM Syndrome have amino acid and lipid metabolic disorders and that the gut microbiota plays an important role in their metabolic regulation. This study also provides an evidence-based strategy for exploring the biological basis of TCM Syndrome differentiation, which is helpful for the translation of TCM theory into precision medicine practice.

## Linked entities

- **Chemicals:** 3-methyl-2-oxo-pentanoic acid (PubChem CID 47)
- **Diseases:** coronary heart disease (MONDO:0005010)
- **Species:** Muribaculum (taxon 1918540), Odoribacter (taxon 283168), Agathobacter (taxon 1766253)

## Full-text entities

- **Diseases:** coronary heart disease (MESH:D003327), metabolic disorder (MESH:D008659), angina (MESH:D000787), Syndrome (MESH:D013577), PD (MESH:D010300)
- **Chemicals:** amino acid (MESH:D000596), branched-chain amino acid (MESH:D000597), 3-methyl-2-oxo-pentanoic acid (-), lipid (MESH:D008055), glycerophospholipid (MESH:D020404)
- **Species:** Agathobacter (genus) [taxon 1766253], Odoribacter (genus) [taxon 283168], Homo sapiens (human, species) [taxon 9606]

## Full text

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## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC13006993/full.md

## References

60 references — full list in the complete paper: https://tomesphere.com/paper/PMC13006993/full.md

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Source: https://tomesphere.com/paper/PMC13006993