# The murine MHC-E molecule Qa-1b is surface displayed in a peptide-free conformation in homeostasis

**Authors:** Gaby Schaap, Soroush Ghaffari, Jim Middelburg, Marjolein Sluijter, Lisa Griffioen, Tom A. W. Schoufour, Ruud H. M. Wijdeven, Jacques Neefjes, Ramon Arens, Jon Weidanz, Thorbald van Hall

PMC · DOI: 10.3389/fimmu.2026.1743362 · Frontiers in Immunology · 2026-03-09

## TL;DR

The study reveals that murine Qa-1b, a nonclassical MHC-E molecule, can be displayed on the cell surface without bound peptides under normal conditions.

## Contribution

The study identifies a novel regulatory mechanism involving peptide-free MHC-E molecules beyond the NKG2x/CD94 immune checkpoint.

## Key findings

- Qdm presentation by Qa-1b requires interferon-γ and the peptide-loading complex.
- 6A8.6F10 antibody binds to peptide-free Qa-1b complexes, independent of PLC components.
- Peptide-free Qa-1b may represent an additional regulatory layer in immune responses.

## Abstract

Qa-1b, the murine ortholog of the nonclassical MHC-E family, contains minimal polymorphism and exhibits reduced surface stability compared with classical MHC class I molecules. To investigate Qa-1b conformations and their immunological relevance, we employed two antibodies: EXX-1, which selectively recognizes Qa-1b bound to the canonical leader peptide Qdm, and 6A8.6F10, a broadly used Qa-1b-reactive antibody. Genome-wide CRISPR screens revealed that Qdm presentation was induced by interferon-γ and required the components of the peptide-loading complex (PLC) and endoplasmic reticulum quality control. EXX-1 binding thus reflected broad cellular integrity and mirrored CD94/NKG2x receptor engagement. In contrast, 6A8.6F10 staining occurred independently of PLC components such as ERAP1 and tapasin, and intriguingly increased in their absence. Accordingly, exogenous pulsing with Qa-1b-binding peptides markedly reduced 6A8.6F10 antibody binding and resonance shift assays revealed that 6A8.6F10 selectively recognizes peptide-deficient Qa-1b complexes. These findings suggest an additional layer of regulation beyond the immune checkpoint NKG2x/CD94, involving peptide-free MHC-E.

## Linked entities

- **Genes:** H2-T23 (histocompatibility 2, T region locus 23) [NCBI Gene 15040], ERAP1 (endoplasmic reticulum aminopeptidase 1) [NCBI Gene 51752], tapbp.2 (TAP binding protein (tapasin), tandem duplicate 2) [NCBI Gene 100034470]
- **Proteins:** Qdm (H2-Q1 determinant modifier), KLRD1 (killer cell lectin like receptor D1), ERAP1 (endoplasmic reticulum aminopeptidase 1), tapbp.2 (TAP binding protein (tapasin), tandem duplicate 2)

## Full-text entities

- **Genes:** Klrd1 (killer cell lectin-like receptor, subfamily D, member 1) [NCBI Gene 16643] {aka CD94}, Qdm (H2-Q1 determinant modifier) [NCBI Gene 110042], Tapbp (TAP binding protein) [NCBI Gene 21356] {aka D17Wsu91e, TPN}, H2-T23 (histocompatibility 2, T region locus 23) [NCBI Gene 15040] {aka 37b, 37c, H-2T23, H2-K1, H2-Qa1, Qa-1}, Erap1 (endoplasmic reticulum aminopeptidase 1) [NCBI Gene 80898] {aka A-LAP, ARTS-1, Arts1, ERAAP, PILSA, PILSAP}, Ifng (interferon gamma) [NCBI Gene 15978] {aka IFN-g, If2f, Ifg}
- **Species:** Mus musculus (house mouse, species) [taxon 10090]

## Full text

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## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC13006831/full.md

## References

51 references — full list in the complete paper: https://tomesphere.com/paper/PMC13006831/full.md

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Source: https://tomesphere.com/paper/PMC13006831