# Methanogenesis couples with arsenic methylation in urban interface biofilms under arsenic-phosphorus decoupling stress

**Authors:** Bangxiao Zheng, Yingsen Lei, Yunwei Lin, Mingxi Zhou, Qingfang Bi

PMC · DOI: 10.3389/fmicb.2026.1798642 · Frontiers in Microbiology · 2026-03-09

## TL;DR

Urban interface biofilms show a link between arsenic methylation and methane production under arsenic and phosphorus stress.

## Contribution

The study reveals a novel mechanistic coupling between arsenic methylation and methanogenesis in urban interface biofilms.

## Key findings

- Industrial sites showed high arsenic and low phosphorus, leading to enrichment of arsM and pstS genes.
- Arsenic methylation was strongly correlated with methanogenic potential genes mcrA and dsrB.
- Microcosm experiments confirmed methane production linked to arsM abundance and reduced CO2 flux.

## Abstract

Urban interface biofilms represent understudied microenvironments where atmospheric deposition, microbial colonization, and stormwater runoff intersect, yet their role in contaminant transformation and greenhouse gas dynamics remains poorly understood.

Here, we investigated arsenic-phosphorus biogeochemistry and microbial functional gene dynamics across 18 urban interface sites.

We discovered a striking arsenic-phosphorus decoupling pattern, with industrial sites exhibiting high arsenic (92.1 mg kg−1) but low phosphorus (322 mg kg−1) concentrations, contrasting with control sites showing the opposite pattern. This decoupling, driven by differential rain-washing dynamics (24.5% As loss vs. 13.5% P loss), created unique selective pressure that drove co-enrichment of arsenic methylation (arsM) and high-affinity phosphate transporter (pstS) genes (r = 0.88, p < 0.001). Methylated arsenic species (MMA + DMA) comprising 18%–27% of total arsenic in stormwater runoff provided direct evidence of active arsM-mediated biotransformation. Most significantly, we found strong coupling between arsenic methylation and methanogenic potential, with arsM showing remarkable correlations with mcrA (r = 0.99) and dsrB (r = 0.98). Microcosm incubations confirmed this pattern, revealing CH4 production rates positively correlated with arsM abundance while CO2 flux showed an inverse trend, suggesting arsenic contamination shifts microbial carbon metabolism toward anaerobic pathways. Microbial community analysis revealed selective enrichment of arsenic-tolerant genera (Acinetobacter, Pseudomonas) and reduced alpha diversity at contaminated sites.

These findings establish urban interfaces as previously unrecognized hotspots where arsenic transformation and greenhouse gas production are mechanistically coupled, with important implications for understanding urban biogeochemical cycles and their environmental impacts.

## Linked entities

- **Genes:** arsM (arsenite methyltransferase) [NCBI Gene 1475676], KLK4 (kallikrein related peptidase 4) [NCBI Gene 9622], mcrA (Type IV methyl-directed restriction enzyme EcoKMcrA) [NCBI Gene 945727], dsrB (hypothetical protein) [NCBI Gene 912856]
- **Chemicals:** arsenic (PubChem CID 5359596), phosphorus (PubChem CID 139579), methane (PubChem CID 297), CO2 (PubChem CID 280)
- **Species:** Acinetobacter (taxon 469), Pseudomonas (taxon 286)

## Full-text entities

- **Chemicals:** As (MESH:D001151), carbon (MESH:D002244), MMA (-), DMA (MESH:C405765), CH4 (MESH:D008697), P (MESH:D010758), CO2 (MESH:D002245)
- **Species:** Pseudomonas (RNA similarity group I, genus) [taxon 286], Acinetobacter (genus) [taxon 469]

## Full text

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## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC13006510/full.md

## References

38 references — full list in the complete paper: https://tomesphere.com/paper/PMC13006510/full.md

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Source: https://tomesphere.com/paper/PMC13006510