# Identification of Smmhc-expressing mesenchymal cells in orofacial bone at single-cell resolution

**Authors:** Yi Fan, Yali Wei, Zhuoxuan Wu, Qin Huang, Chen Cui, Zucen Li, Ruoshi Xu, Quan Yuan, Chenchen Zhou

PMC · DOI: 10.1038/s41413-026-00518-4 · Bone Research · 2026-03-23

## TL;DR

This study identifies a new type of stem cell in mouse orofacial bone that is crucial for bone development and tissue balance.

## Contribution

The discovery of Smmhc-expressing mesenchymal stem/stromal cells as a novel and functionally essential subset for craniofacial bone homeostasis.

## Key findings

- Smmhc+ MSCs are multipotent and give rise to osteoblasts, osteocytes, periodontal ligament cells, and dental pulp cells.
- Ablation of Smmhc+ MSCs impairs orofacial bone development and disrupts tissue homeostasis.
- Smmhc+ MSCs regulate the balance between osteogenesis and bone resorption in the orofacial skeletal niche.

## Abstract

Craniofacial bone regeneration remains a major clinical challenge, yet the identity of orofacial mesenchymal stem/stromal cells (OMSCs) has not been fully elucidated. Here, we performed single-cell RNA sequencing (scRNA-seq) on mouse orofacial bone and identified multiple stromal cell clusters. Cell-cell communication mapping and trajectory inference uncovered the heterogeneity of OMSCs and functional divergence among subpopulations. We identified a previously unrecognized population, Smmhc-expressing mesenchymal stem/stromal cells (MSCs), at the earliest stage of the progenitor lineage trajectory. In vivo lineage tracing demonstrated that Smmhc+ MSCs are multipotent, giving rise to osteoblasts, osteocytes, periodontal ligament (PDL) cells, and dental pulp cells. Targeted ablation of Smmhc+ MSCs using SmmhcCreER;iDTR mouse model led to impaired orofacial bone development and disrupted orofacial tissue homeostasis, characterized by reduced osteogenic differentiation and non-cell autonomous reduction of bone resorption. Collectively, this study establishes a cellular atlas of OMSCs and identifies Smmhc+ MSCs as a functionally indispensable subset for craniofacial bone homeostasis, orchestrating the dynamic balance between osteogenesis and bone resorption within the orofacial skeletal niche.

## Linked entities

- **Genes:** MYH11 (myosin heavy chain 11) [NCBI Gene 4629]
- **Species:** Mus musculus (taxon 10090)

## Full-text entities

- **Genes:** Cdhr5 (cadherin-related family member 5) [NCBI Gene 72040] {aka 1810074H01Rik, Mucdhl, Mupcdh}, Vwf (Von Willebrand factor) [NCBI Gene 22371] {aka 6820430P06Rik, B130011O06Rik, C630030D09, F8VWF, VWD}, Mdk (midkine) [NCBI Gene 17242] {aka MK, Mek}, Comp (cartilage oligomeric matrix protein) [NCBI Gene 12845] {aka TSP5}, Tnfsf11 (tumor necrosis factor (ligand) superfamily, member 11) [NCBI Gene 21943] {aka Ly109l, ODF, OPGL, RANKL, Trance}, Myf5 (myogenic factor 5) [NCBI Gene 17877] {aka B130010J22Rik, Myf-5, bHLHc2}, PDGFRB (platelet derived growth factor receptor beta) [NCBI Gene 5159] {aka CD140B, IBGC4, IMF1, JTK12, KOGS, OPDKD}, Mmp13 (matrix metallopeptidase 13) [NCBI Gene 17386] {aka Clg, MMP-13, Mmp1}, Acan (aggrecan) [NCBI Gene 11595] {aka Agc, Agc1, CSPCP, Cspg1, b2b183Clo, cmd}, VWF (von Willebrand factor) [NCBI Gene 7450] {aka F8VWF, VWD}, Pdgfa (platelet derived growth factor, alpha) [NCBI Gene 18590] {aka PDGF-1}, Csf1 (colony stimulating factor 1 (macrophage)) [NCBI Gene 12977] {aka BAP025, Csfm, MCSF, Mhdabap25, PG-M-CSF, op}, Sema3a (sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A) [NCBI Gene 20346] {aka Hsema-I, SEMA1, SemD, Semad, coll-1}, PRRX1 (paired related homeobox 1) [NCBI Gene 5396] {aka AGOTC, PHOX1, PMX1, PRX-1, PRX1}, MCAM (melanoma cell adhesion molecule) [NCBI Gene 4162] {aka CD146, HEMCAM, METCAM, MUC18, MelCAM}, Ctsk (cathepsin K) [NCBI Gene 13038] {aka MMS10-Q, Ms10q, catK}, Gdf15 (growth differentiation factor 15) [NCBI Gene 23886] {aka MIC-1, NAG-1, SBF}, Col2a1 (collagen, type II, alpha 1) [NCBI Gene 12824] {aka Col2, Col2a, Col2a-1, Del1, Dmm, Lpk}, CSPG4 (chondroitin sulfate proteoglycan 4) [NCBI Gene 1464] {aka CSPG4A, HMW-MAA, MCSP, MCSPG, MEL-CSPG, MSK16}, Cd34 (CD34 antigen) [NCBI Gene 12490], Pik3r1 (phosphoinositide-3-kinase regulatory subunit 1) [NCBI Gene 18708] {aka PI3K, p50alpha, p55alpha, p85alpha}, Mef2c (myocyte enhancer factor 2C) [NCBI Gene 17260] {aka 5430401D19Rik, 9930028G15Rik, Mef2}, Mpz (myelin protein zero) [NCBI Gene 17528] {aka Mpp, P-zero, P0}, Hbegf (heparin-binding EGF-like growth factor) [NCBI Gene 15200] {aka Dtr, Dts, Hegfl}, ACTA1 (actin alpha 1, skeletal muscle) [NCBI Gene 58] {aka ACTA, ASMA, CFTD, CFTD1, CFTDM, CMYO2A}, Pcp4l1 (Purkinje cell protein 4-like 1) [NCBI Gene 66425] {aka 1500036F01Rik}, Sorbs2 (sorbin and SH3 domain containing 2) [NCBI Gene 234214] {aka 2010203O03Rik, 9430041O17Rik, A530071H08, Argbp2, mKIAA0777, nArgBP2}, Cdh5 (cadherin 5) [NCBI Gene 12562] {aka 7B4, Cd144, VE-Cad, VECD, VEcad, Vec}, Mylk (myosin, light polypeptide kinase) [NCBI Gene 107589] {aka 9530072E15Rik, A930019C19Rik, KRP, MLCK108, MLCK210, Mlck}, Sp7 (Sp7 transcription factor 7) [NCBI Gene 170574] {aka 6430578P22Rik, C22, Osx}, KRT14 (keratin 14) [NCBI Gene 3861] {aka CK14, EBS1, EBS1A, EBS1B, EBS1C, EBS1D}, Bsp (black spleen) [NCBI Gene 103993], Runx2 (runt related transcription factor 2) [NCBI Gene 12393] {aka AML3, CBF-alpha-1, Cbf, Cbfa-1, Cbfa1, LS3}, PTPRC (protein tyrosine phosphatase receptor type C) [NCBI Gene 5788] {aka B220, CD45, CD45R, GP180, IMD105, L-CA}, Fgfr1 (fibroblast growth factor receptor 1) [NCBI Gene 14182] {aka Eask, FGFR-I, FLG, Fgfr-1, Flt-2, Fr1}, FAT4 (FAT atypical cadherin 4) [NCBI Gene 79633] {aka CDHF14, CDHR11, FAT-J, FATJ, HKLLS2, NBLA00548}, Plin1 (perilipin 1) [NCBI Gene 103968] {aka 6030432J05Rik, Peri, Plin}, Col1a2 (collagen, type I, alpha 2) [NCBI Gene 12843] {aka Col1a-2, Cola-2, Cola2, oim}, Fn1 (fibronectin 1) [NCBI Gene 14268] {aka E330027I09, Fn, Fn-1}, Pdlim7 (PDZ and LIM domain 7) [NCBI Gene 67399] {aka LMP}, alp (alopecia, recessive) [NCBI Gene 11691], Myog (myogenin) [NCBI Gene 17928] {aka MYF4, bHLHc3, myo}, CDH5 (cadherin 5) [NCBI Gene 1003] {aka 7B4, CD144}, IFITM5 (interferon induced transmembrane protein 5) [NCBI Gene 387733] {aka BRIL, DSPA1, Hrmp1, OI5, fragilis4}, Tnfrsf11b (tumor necrosis factor receptor superfamily, member 11b (osteoprotegerin)) [NCBI Gene 18383] {aka OCIF, Opg, TR1}, S100a9 (S100 calcium binding protein A9 (calgranulin B)) [NCBI Gene 20202] {aka 60B8Ag, BEE22, Cagb, GAGB, L1Ag, MRP14}, Plvap (plasmalemma vesicle associated protein) [NCBI Gene 84094] {aka MECA32, Pv1}, Flt1 (FMS-like tyrosine kinase 1) [NCBI Gene 14254] {aka Flt-1, VEGFR-1, VEGFR1, sFlt1}, Trp53-ps (transformation related protein 53, pseudogene) [NCBI Gene 22060], Bglap (bone gamma carboxyglutamate protein) [NCBI Gene 12096] {aka BGP, Bglap1, OC, OG1, mOC-A}, Nr1i3 (nuclear receptor subfamily 1, group I, member 3) [NCBI Gene 12355] {aka CAR, CAR-beta, Care2, ESTM32, MB67}, Wnt5a (wingless-type MMTV integration site family, member 5A) [NCBI Gene 22418] {aka 8030457G12Rik, Wnt-5a}, Cd200 (CD200 molecule) [NCBI Gene 17470] {aka Mox2, OX2}, Fgf1 (fibroblast growth factor 1) [NCBI Gene 14164] {aka Dffrx, Fam, Fgf-1, Fgf2b, Fgfa}, Ly76 (lymphocyte antigen 76) [NCBI Gene 104231] {aka TER-119, Ter119}, CD34 (CD34 molecule) [NCBI Gene 947], Msc (musculin) [NCBI Gene 17681] {aka MyoR, bHLHa22}, Ptn (pleiotrophin) [NCBI Gene 19242] {aka HARP, HB-GAM, HBBM, HBBN, HBGF-8, HBNF}, Tgfbr2 (transforming growth factor, beta receptor II) [NCBI Gene 21813] {aka 1110020H15Rik, DNIIR, RIIDN, TBR-II, TbetaR-II, TbetaRII}, Cxcl12 (C-X-C motif chemokine ligand 12) [NCBI Gene 20315] {aka Pbsf, Scyb12, Sdf1, Tlsf, Tpar1}
- **Diseases:** Oral Diseases (MESH:D009059), resorption (MESH:D014091), bone resorption (MESH:D001862), bone defect (MESH:D001847), orofacial defects (MESH:D020820), osteoporosis (MESH:D010024), bone fracture (MESH:D050723), inflammation (MESH:D007249), craniofacial bone defects and disorders (MESH:D019465), dislocation (MESH:D004204), chronic apical periodontitis (MESH:D010485)
- **Chemicals:** PFA (MESH:C003043), eosin (MESH:D004801), DAPI (MESH:C007293), lipid (MESH:D008055), EDTA (MESH:D004492), dexamethasone (MESH:D003907), TRIzol (MESH:C411644), Alexa Fluor 488 (MESH:C000711379), biotin (MESH:D001710), Calcein (MESH:C007740), Adipogenic Induction Medium B (-), streptomycin (MESH:D013307), ethanol (MESH:D000431), sodium bicarbonate (MESH:D017693), CO2 (MESH:D002245), ascorbic acid (MESH:D001205), Hematoxylin (MESH:D006416), Tamoxifen (MESH:D013629), alpha-MEM (MESH:C420642), rosiglitazone (MESH:D000077154), 3-isobutyl-1-methylxanthine (MESH:D015056), penicillin (MESH:D010406), H&amp;E (MESH:D006371)
- **Species:** Homo sapiens (human, species) [taxon 9606], Mus musculus (house mouse, species) [taxon 10090]

## Full text

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## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC13006450/full.md

## References

6 references — full list in the complete paper: https://tomesphere.com/paper/PMC13006450/full.md

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Source: https://tomesphere.com/paper/PMC13006450