# The JMJD family histone demethylases: structure, mechanism of action, diseases and therapeutic targets

**Authors:** Yilin Hong, Hanshi Guo, Qiang Chen, Chundong Yu

PMC · DOI: 10.1186/s43556-026-00434-3 · 2026-03-20

## TL;DR

This review explores the JMJD family of enzymes, their roles in various diseases, and their potential as therapeutic targets.

## Contribution

The paper offers a cross-disease perspective on JMJD functions, revealing shared and unique regulatory roles.

## Key findings

- JMJD proteins can act as both promoters and suppressors of disease depending on the context.
- The review identifies common pathways and networks influenced by JMJD enzymes across multiple diseases.
- It highlights progress in developing small-molecule inhibitors for therapeutic use.

## Abstract

The Jumonji C domain-containing (JMJD) family of histone demethylases constitutes an essential class of epigenetic regulators that dynamically sculpt gene expression programs through the erasure of methyl groups from histone lysine and arginine residues. Dysregulation of these enzymes is increasingly implicated in the pathogenesis of a wide spectrum of human diseases. Yet, a fragmented, disease-specific understanding has thus far hindered a unified view of their functions across different pathological states. In this review, we provide a comprehensive and comparative analysis of the JMJD family, synthesizing their roles and mechanisms across diverse human conditions, including cancer, neurological disorders, inflammatory, autoimmune, cardiovascular, and metabolic diseases. We highlight that individual JMJD proteins can function paradoxically as both promoters and suppressors of pathology, a duality determined by the specific cellular and pathological context. A key novelty of our work is its integrated, cross-disease perspective, which moves beyond conventional silos to illuminate common pathophysiological pathways and unique regulatory networks orchestrated by these epigenetic erasers. Furthermore, we critically assess the associated therapeutic landscape, summarizing advances in the development of small-molecule JMJD inhibitors and discussing innovative strategies to tackle enduring challenges, such as enzymatic redundancy and selectivity. By integrating insights from disparate disease models, this review seeks to forge a holistic understanding of JMJD biology and accelerate the development of novel epigenetic therapeutics directed at this pivotal protein family.

## Linked entities

- **Diseases:** cancer (MONDO:0004992)

## Full-text entities

- **Genes:** MYD88 (MYD88 innate immune signal transduction adaptor) [NCBI Gene 4615] {aka IMD68, MYD88D, WM1}, MGMT (O-6-methylguanine-DNA methyltransferase) [NCBI Gene 4255], ADM (adrenomedullin) [NCBI Gene 133] {aka AM, PAMP}, KDM3B (lysine demethylase 3B) [NCBI Gene 51780] {aka 5qNCA, C5orf7, DIJOS, JMJD1B, NET22}, Kdm4b (lysine (K)-specific demethylase 4B) [NCBI Gene 193796] {aka 4732474L06Rik, Jmjd2b}, KDM6B (lysine demethylase 6B) [NCBI Gene 23135] {aka JMJD3, NEDCFSA, NEDSST}, ETV1 (ETS variant transcription factor 1) [NCBI Gene 2115] {aka ER81}, PRKAA2 (protein kinase AMP-activated catalytic subunit alpha 2) [NCBI Gene 5563] {aka AMPK, AMPK2, AMPKa2, PRKAA}, ELK4 (ETS transcription factor ELK4) [NCBI Gene 2005] {aka SAP1}, TPR (translocated promoter region, nuclear basket protein) [NCBI Gene 7175] {aka MRT79}, PDK1 (pyruvate dehydrogenase kinase 1) [NCBI Gene 5163], SNAI1 (snail family transcriptional repressor 1) [NCBI Gene 6615] {aka SLUGH2, SNA, SNAH, SNAIL, SNAIL1, dJ710H13.1}, IL1A (interleukin 1 alpha) [NCBI Gene 3552] {aka IL-1 alpha, IL-1A, IL1, IL1-ALPHA, IL1F1}, MCL1 (MCL1 apoptosis regulator, BCL2 family member) [NCBI Gene 4170] {aka BCL2L3, EAT, MCL1-ES, MCL1L, MCL1S, Mcl-1}, PCSK9 (proprotein convertase subtilisin/kexin type 9) [NCBI Gene 255738] {aka FH3, FHCL3, HCHOLA3, LDLCQ1, NARC-1, NARC1}, AXIN1 (axin 1) [NCBI Gene 8312] {aka AXIN, CMDOH, PPP1R49}, PPARG (peroxisome proliferator activated receptor gamma) [NCBI Gene 5468] {aka CIMT1, FPLD3, GLM1, NR1C3, PPARG1, PPARG2}, Rps6ka5 (ribosomal protein S6 kinase A5) [NCBI Gene 73086] {aka 3110005L17Rik, 6330404E13Rik, MSK1, MSPK1, RLPK, RLSK}, BRCA1 (BRCA1 DNA repair associated) [NCBI Gene 672] {aka BRCAI, BRCC1, BROVCA1, FANCS, IRIS, PNCA4}, MIR448 (microRNA 448) [NCBI Gene 554212] {aka MIRN448, hsa-mir-448, miRNA448}, RBP2 (retinol binding protein 2) [NCBI Gene 5948] {aka CRABP-II, CRBP-II, CRBP2, CRBPII, RBPC2}, KSR1 (kinase suppressor of ras 1) [NCBI Gene 8844] {aka KSR, RSU2}, HDAC9 (histone deacetylase 9) [NCBI Gene 9734] {aka HD7, HD7b, HD9, HDAC, HDAC7B, HDAC9B}, RELA (RELA proto-oncogene, NF-kB subunit) [NCBI Gene 5970] {aka AIF3BL3, CMCU, NFKB3, p65}, ETV2 (ETS variant transcription factor 2) [NCBI Gene 2116] {aka ER71, ETSRP71}, Kdm6b (KDM1 lysine (K)-specific demethylase 6B) [NCBI Gene 216850] {aka 1700064E03Rik, Jmjd3}, KDM4D (lysine demethylase 4D) [NCBI Gene 55693] {aka JMJD2D}, CDK2 (cyclin dependent kinase 2) [NCBI Gene 1017] {aka CDKN2, p33(CDK2)}, MIR27B (microRNA 27b) [NCBI Gene 407019] {aka MIR-27b, MIRN27B, miRNA27B}, JMJD7 (jumonji domain containing 7) [NCBI Gene 100137047], CCN2 (cellular communication network factor 2) [NCBI Gene 1490] {aka CTGF, HCS24, IBP-8, IGFBP8, KMD, NOV2}, JARID2 (jumonji and AT-rich interaction domain containing 2) [NCBI Gene 3720] {aka DIDDF, JMJ}, Phgdh (3-phosphoglycerate dehydrogenase) [NCBI Gene 236539] {aka 3-PGDH, 3PGDH, 4930479N23, A10, PGAD, PGD}, COX2 (cytochrome c oxidase subunit II) [NCBI Gene 4513] {aka COII, MTCO2}, TP53 (tumor protein p53) [NCBI Gene 7157] {aka BCC7, BMFS5, LFS1, P53, TRP53}, TRIM14 (tripartite motif containing 14) [NCBI Gene 9830], LDHA (lactate dehydrogenase A) [NCBI Gene 3939] {aka GSD11, HEL-S-133P, LDHM, PIG19}, YTHDF3 (YTH N6-methyladenosine RNA binding protein F3) [NCBI Gene 253943] {aka DF3}, LMO2 (LIM domain only 2) [NCBI Gene 4005] {aka LMO-2, RBTN2, RBTNL1, RHOM2, TTG2}, HIF1A (hypoxia inducible factor 1 subunit alpha) [NCBI Gene 3091] {aka HIF-1-alpha, HIF-1A, HIF-1alpha, HIF1, HIF1-ALPHA, MOP1}, TMPRSS2 (transmembrane serine protease 2) [NCBI Gene 7113] {aka PRSS10}, STMN1 (stathmin 1) [NCBI Gene 3925] {aka C1orf215, LAP18, Lag, OP18, PP17, PP19}, TAL1 (TAL bHLH transcription factor 1, erythroid differentiation factor) [NCBI Gene 6886] {aka SCL, TCL5, bHLHa17, tal-1}, H2AX (H2A.X variant histone) [NCBI Gene 3014] {aka H2A.X, H2A/X, H2AFX}, SETD1A (SET domain containing 1A, histone lysine methyltransferase) [NCBI Gene 9739] {aka EPEDD, EPEO2, KMT2F, NEDSID, Set1, Set1A}, DNASE1L3 (deoxyribonuclease 1L3) [NCBI Gene 1776] {aka D3, DHP2, DNAS1L3, LSD, SLEB16}, PRMT1 (protein arginine methyltransferase 1) [NCBI Gene 3276] {aka ANM1, HCP1, HRMT1L2, IR1B4}, PTK2B (protein tyrosine kinase 2 beta) [NCBI Gene 2185] {aka CADTK, CAKB, FADK2, FAK2, PKB, PTK}, SPARCL1 (SPARC like 1) [NCBI Gene 8404] {aka MAST 9, MAST9, PIG33, SC1}, Fdxr (ferredoxin reductase) [NCBI Gene 79122] {aka AR}, CDC123 (cell division cycle 123) [NCBI Gene 8872] {aka C10orf7, D123}, JUN (Jun proto-oncogene, AP-1 transcription factor subunit) [NCBI Gene 3725] {aka AP-1, AP1, c-Jun, cJUN, p39}, CTSL (cathepsin L) [NCBI Gene 1514] {aka CATL, CTSL1, MEP}, PHF8 (PHD finger protein 8) [NCBI Gene 23133] {aka JHDM1F, KDM7B, MRXSSD, ZNF422}, BARD1 (BRCA1 associated RING domain 1) [NCBI Gene 580], C1QTNF3 (C1q and TNF related 3) [NCBI Gene 114899] {aka C1ATNF3, CORCS, CORS, CORS-26, CORS26, CTRP3}, NKX3-1 (NK3 homeobox 1) [NCBI Gene 4824] {aka BAPX2, NKX3, NKX3.1, NKX3A}, SNAI2 (snail family transcriptional repressor 2) [NCBI Gene 6591] {aka SLUG, SLUGH, SLUGH1, SNAIL2, WS2D}, EGFR (epidermal growth factor receptor) [NCBI Gene 1956] {aka ERBB, ERBB1, ERRP, HER1, NISBD2, NNCIS}, TNC (tenascin C) [NCBI Gene 3371] {aka 150-225, DFNA56, GMEM, GP, HXB, JI}
- **Diseases:** CRPC (MESH:D064129), psychiatric conditions (MESH:D001523), tumorigenic (MESH:D002471), spinal cord injury (MESH:D013119), neuroinflammation (MESH:D000090862), HCC (MESH:D006528), arthritis (MESH:D001168), dilated cardiomyopathy (MESH:D002311), cognitive decline (MESH:D003072), GC (MESH:D013274), PD (MESH:D010300), lung injury (MESH:D055370), intellectual disabilities (MESH:D008607), cytotoxicity (MESH:D064420), autoimmune, cardiovascular, and metabolic diseases (MESH:D002318), rheumatoid arthritis (MESH:D001172), central nervous system injury (MESH:D002493), neurodegeneration (MESH:D019636), osteoarthritis (MESH:D010003), HD (MESH:D006816), breast carcinogenesis (MESH:D061325), cardiomyopathies (MESH:D009202), CRC (MESH:D015179), Rett syndrome (MESH:D015518), atherosclerosis (MESH:D050197), UTX deficiency (MESH:D007153), mitochondrial dysfunction (MESH:D028361), cerebral ischemia-reperfusion injury (MESH:D015427), diabetes (MESH:D003920), DIPG (MESH:D000080443), helminth infection (MESH:D007239), insulin resistance (MESH:D007333), neurodevelopmental disorders (MESH:D002658), C (OMIM:211750), GIST (MESH:D046152), invasive ductal carcinoma (MESH:D044584), synaptic impairment (MESH:D012183), gallstones (MESH:D042882), alpha thalassemia/mental retardation syndrome X-linked (MESH:C538258), DCS (OMIM:613290), NAFLD (MESH:D065626), depression (MESH:D003866), obese (MESH:D009765), TNBC (MESH:D064726), Leukemia (MESH:D007938), lung inflammation (MESH:D011014), kidney injury (MESH:D007674), carcinogenesis (MESH:D063646), ARID (MESH:D000080203), bacterial infections (MESH:D001424), AML (MESH:D015470), NASH (MESH:D005235), lung metastasis (MESH:D009362), PCa (MESH:D011471), acute injury (MESH:D001930), cardiac hypertrophy (MESH:D006332), primary effusion lymphoma (MESH:D054685), AD (MESH:D000544), liver injury (MESH:D017093), X chromosome-linked mental retardation (MESH:D038901)
- **Chemicals:** ML324 (MESH:C000722507), oxaliplatin (MESH:D000077150), Docetaxel (MESH:D000077143), PLGA (MESH:D000077182), trichloroethylene (MESH:D014241), irinotecan (MESH:D000077146), doxorubicin (MESH:D004317), lipid (MESH:D008055), cisplatin (MESH:D002945), fumarate (MESH:D005650), serine (MESH:D012694), lenalidomide (MESH:D000077269), QC6352 (MESH:C000624726), cholesterol (MESH:D002784), GSK-J4 (MESH:C000593030), CPI-455 (-), PKF118-310 (MESH:C548732), H2S (MESH:D006862), curcumin (MESH:D003474), 17-AAG (MESH:C112765), 2,4-PDCA (MESH:C055293), pyrazole (MESH:C031280), glutamine (MESH:D005973), JIB-04 (MESH:C585278), O (MESH:D010100), fatty acid (MESH:D005227), CO2 (MESH:D002245), LPS (MESH:D008070), fulvestrant (MESH:D000077267), tamoxifen (MESH:D013629), vitamin D (MESH:D014807), glucose (MESH:D005947), tyrosine (MESH:D014443), myricetin (MESH:C040015), decitabine (MESH:D000077209), Lenvatinib (MESH:C531958), lysine (MESH:D008239), APR-246 (MESH:C533410), NAD+ (MESH:D009243), ROS (MESH:D017382), enzalutamide (MESH:C540278), succinate (MESH:D019802), formaldehyde (MESH:D005557), 2-Oxoglutarate (MESH:D007656), Dexmedetomidine (MESH:D020927), amino acid (MESH:D000596), palmitic acid (MESH:D019308), TMZ (MESH:D000077204)
- **Species:** Homo sapiens (human, species) [taxon 9606], Salmonella (genus) [taxon 590], Drosophila melanogaster (fruit fly, species) [taxon 7227], Human papillomavirus (species) [taxon 10566], Human gammaherpesvirus 8 (no rank) [taxon 37296], Mus musculus (house mouse, species) [taxon 10090], Human immunodeficiency virus 1 (no rank) [taxon 11676], Hepatitis B virus (no rank) [taxon 10407], Helicobacter pylori (species) [taxon 210], Bacteroides fragilis (species) [taxon 817], Rattus norvegicus (brown rat, species) [taxon 10116], Human alphaherpesvirus 1 (Herpes simplex virus type 1, no rank) [taxon 10298]
- **Mutations:** A2A, JAK2(V617F
- **Cell lines:** PC3 — Homo sapiens (Human), Prostate carcinoma, Cancer cell line (CVCL_0035), DU145 — Homo sapiens (Human), Prostate carcinoma, Cancer cell line (CVCL_0105)

## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC13003115/full.md

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Source: https://tomesphere.com/paper/PMC13003115