# RPA directly stimulates Mer3 helicase processivity to ensure normal crossover formation in meiosis

**Authors:** Veronika Altmannova, Lucija Orlić, Carolina Carrasco, Céline Adam, Clara Aicart-Ramos, Dario Guerrini, Petra Janning, Valérie Borde, Joao Matos, Fernando Moreno-Herrero, John R. Weir

PMC · DOI: 10.1038/s41467-026-69985-x · 2026-03-18

## TL;DR

This study shows how the Mer3 helicase works with RPA to ensure proper genetic recombination during meiosis, which is vital for fertility and genetic diversity.

## Contribution

The study reveals a direct interaction between Mer3 and RPA that enhances Mer3's helicase activity during meiosis.

## Key findings

- Mer3 interacts directly with RPA in both yeast and humans.
- RPA binding is necessary for Mer3 helicase processivity under low DNA tension.
- A Mer3 mutant lacking RPA binding shows reduced crossovers and unresolved recombination intermediates.

## Abstract

Meiotic crossover formation is critical for generating viable gametes and enhancing genetic diversity. The helicase Mer3 (HFM1 in humans) is a highly conserved factor essential for promoting crossovers and ensuring their proper distribution. Here, we identify replication protein A (RPA) as a direct interactor of budding yeast Mer3. We demonstrate that this interaction is conserved between human HFM1 and RPA. Cross-linking mass spectrometry and structural modelling with AlphaFold2 reveal a conserved and specific Mer3-RPA interface. Single-molecule magnetic tweezers assays demonstrate that direct RPA interaction is required for Mer3 helicase processivity under conditions of low DNA tension. Consistently, a mer3 mutant deficient in RPA binding exhibits reduced crossover frequencies and accumulates unresolved recombination intermediates during budding yeast meiosis. Via genome-wide localisation experiments, we link this effect to weakened recruitment of the mer3 mutant to double-strand break sites. Our findings provide mechanistic insights into coordination of meiotic recombination by the Mer3 helicase through interactions with the canonical DNA repair machinery, highlighting a conserved mechanism underlying crossover control during sexual reproduction.

Meiotic crossovers are essential for fertility and genetic diversity. Here, the authors show that the conserved helicase Mer3 directly binds RPA, and this interaction stimulates helicase activity to ensure normal crossover formation during meiosis.

## Linked entities

- **Genes:** HFM1 (helicase for meiosis 1) [NCBI Gene 164045], HFM1 (helicase for meiosis 1) [NCBI Gene 164045]
- **Proteins:** RPA1 (replication protein A1), HFM1 (helicase for meiosis 1), HFM1 (helicase for meiosis 1)
- **Species:** Homo sapiens (taxon 9606)

## Full-text entities

- **Genes:** Myc (Myc proto-oncogene, bHLH transcription factor) [NCBI Gene 17869] {aka Myc2, Niard, Nird, bHLHe39}, RAD2 (ssDNA endodeoxyribonuclease RAD2) [NCBI Gene 853174], LCD1 (Lcd1p) [NCBI Gene 852110] {aka DDC2, PIE1}, RAD51 (recombinase RAD51) [NCBI Gene 856831] {aka MUT5}, SGS1 (ATP-dependent DNA helicase SGS1) [NCBI Gene 855228], MSH4 (mutS homolog 4) [NCBI Gene 4438] {aka ASG, POF20, SPGF2}, SMARCAL1 (SNF2 related chromatin remodeling annealing helicase 1) [NCBI Gene 50485] {aka HARP, HHARP}, SLC39A2 (solute carrier family 39 member 2) [NCBI Gene 29986] {aka 6A1, ETI-1, ZIP-2, ZIP2}, SPO11 (DNA topoisomerase (ATP-hydrolyzing)) [NCBI Gene 856364], Pgk1 (phosphoglycerate kinase 1) [NCBI Gene 18655] {aka Pgk-1}, RFA1 (replication factor A subunit protein RFA1) [NCBI Gene 851266] {aka BUF2, FUN3, RPA1, RPA70}, MBP (myelin basic protein) [NCBI Gene 4155], WRN (WRN RecQ like helicase) [NCBI Gene 7486] {aka RECQ3, RECQL2, RECQL3}, MLH1 (mutL homolog 1) [NCBI Gene 4292] {aka COCA2, FCC2, HNPCC, HNPCC2, LYNCH2, MLH-1}, EXO1 (Rad2 family nuclease EXO1) [NCBI Gene 854198] {aka DHS1}, TTK (TTK protein kinase) [NCBI Gene 7272] {aka CT96, ESK, MPH1, MPS1, MPS1L1, PYT}, RFA2 (Rfa2p) [NCBI Gene 855404] {aka BUF1, RPA2, RPA32}, MEC1 (protein kinase MEC1) [NCBI Gene 852433] {aka ESR1, RAD31, SAD3}, FANCM (FA complementation group M) [NCBI Gene 57697] {aka FAAP250, KIAA1596, POF15, SPGF28}, RMI1 (Rmi1p) [NCBI Gene 856083] {aka NCE4}, CDC5 (polo kinase CDC5) [NCBI Gene 855013] {aka MSD2, PKX2}, LEU2 (3-isopropylmalate dehydrogenase) [NCBI Gene 850342], RPA1 (replication protein A1) [NCBI Gene 6117] {aka HSSB, MST075, PFBMFT6, REPA1, RF-A, RP-A}, ADARB1 (adenosine deaminase RNA specific B1) [NCBI Gene 104] {aka ADAR2, DRABA2, DRADA2, NEDHYMS, RED1}, NFT1 (putative multidrug transporter NFT1) [NCBI Gene 853978], MTR4 (ATP-dependent RNA helicase MTR4) [NCBI Gene 853397] {aka DOB1}, HIS4 (trifunctional histidinol dehydrogenase/phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase) [NCBI Gene 850327], THR1 (homoserine kinase) [NCBI Gene 856420], GAT1 (Gat1p) [NCBI Gene 850523] {aka MEP80, NIL1}, MRE11 (MRX complex nuclease subunit) [NCBI Gene 855264] {aka NGS1, RAD58, XRS4}, MSH5 (mutS homolog 5) [NCBI Gene 4439] {aka G7, MUTSH5, NG23, POF13, SPGF74}, DNA2 (bifunctional ATP-dependent DNA helicase/ssDNA endodeoxyribonuclease DNA2) [NCBI Gene 856569] {aka WEB2}, MLH2 (mismatch repair protein MLH2) [NCBI Gene 850722], BRR2 (ATP-dependent RNA helicase BRR2) [NCBI Gene 856919] {aka PRP44, RSS1, SLT22, SNU246}, RFA3 (Rfa3p) [NCBI Gene 853266] {aka RPA14, RPA3}, HFM1 (DNA helicase) [NCBI Gene 852641] {aka MER3}, SLC39A4 (solute carrier family 39 member 4) [NCBI Gene 55630] {aka AEZ, AWMS2, ZIP4}, DMC1 (recombinase DMC1) [NCBI Gene 856926] {aka ISC2}, HFM1 (helicase for meiosis 1) [NCBI Gene 164045] {aka MER3, POF9, SEC63D1, Si-11, Si-11-6, helicase}, SAE2 (ssDNA endodeoxyribonuclease SAE2) [NCBI Gene 852700] {aka COM1}, BLM (BLM RecQ like helicase) [NCBI Gene 641] {aka BS, MGRISCE1, RECQ2, RECQL2, RECQL3}
- **Diseases:** infertility (MESH:D007246), DSB (MESH:D019457), XL (MESH:D000080345), cancer (MESH:D009369), WT (MESH:D009396), pan (MESH:C537931), premature ovarian insufficiency (MESH:D016649), non-obstructive azoospermia (MESH:D053713)
- **Chemicals:** TCEP (MESH:C080938), Bis-Tris (MESH:C026272), HEPES (MESH:D006531), agar (MESH:D000362), nitrogen (MESH:D009584), NaCl (MESH:D012965), EDTA (MESH:D004492), polyacrylamide (MESH:C016679), biotin (MESH:D001710), Digoxigenin (MESH:D004076), H2O (MESH:D014867), trichloroacetic acid (MESH:D014238), glycerol (MESH:D005990), dTTP (MESH:C024157), His (MESH:D006639), uracil (MESH:D014498), Tween-20 (MESH:D011136), acetic acid (MESH:D019342), CO2 (MESH:D002245), ATP (MESH:D000255), amine (MESH:D000588), AEBSF (MESH:C002010), MOPS (MESH:C008550), spectinomycin (MESH:D000198), ampicillin (MESH:D000667), Heparin (MESH:D006493), propidium iodide (MESH:D011419), maltose (MESH:D008320), dCTP (MESH:C024107), HCl (MESH:D006851), potassium acetate (MESH:D019347), kanamycin (MESH:D007612), oligonucleotide (MESH:D009841), MgCl2 (MESH:D015636), poly dCs (MESH:C023826), SDS (MESH:D012967), glutaraldehyde (MESH:D005976), oligosaccharide (MESH:D009844), chloroform (MESH:D002725), glutathione (MESH:D005978), phenol (MESH:D019800), Leu (MESH:D007930), PBS (MESH:D007854), pluronic (MESH:D020442), IBA (MESH:C587045), IPTG (MESH:D007544), ethanol (MESH:D000431), acetone (MESH:D000096), polystyrene (MESH:D011137), TB (MESH:D013725), imidazole (MESH:C029899), salt (MESH:D012492), oil (MESH:D009821), T (MESH:D014316), NP-40 (MESH:C010615), dATP (MESH:C026600), IP (MESH:C041508), Orange G (MESH:C008710), agarose (MESH:D012685), ethidium bromide (MESH:D004996)
- **Species:** Saccharomyces mikatae (species) [taxon 114525], Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932], Escherichia coli (E. coli, species) [taxon 562], Homo sapiens (human, species) [taxon 9606], Mus musculus (house mouse, species) [taxon 10090]
- **Cell lines:** Spore — Mus musculus (Mouse), Hybridoma (CVCL_B0UF), C41 — Homo sapiens (Human), Human papillomavirus-related cervical squamous cell carcinoma, Cancer cell line (CVCL_2253), BL21(DE3)Star — Canis lupus familiaris (Dog), Canine mammary carcinoma, Cancer cell line (CVCL_B7H9), Hi5 insect — Trichoplusia ni (Cabbage looper), Spontaneously immortalized cell line (CVCL_C190), SK1 — Homo sapiens (Human), Melanoma, Cancer cell line (CVCL_0068), S288C — Homo sapiens (Human), Finite cell line (CVCL_L938), pSP73-JY0 — Homo sapiens (Human), Transformed cell line (CVCL_0108)

## Figures

8 figures with captions in the complete paper: https://tomesphere.com/paper/PMC13003030/full.md

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Source: https://tomesphere.com/paper/PMC13003030