# Histone methyltransferase DOT1L differentially affects the development of dendritic cell subsets

**Authors:** Rianne G Bouma, Willem-Jan de Leeuw, Aru Z Wang, Muddassir Malik, Joeke GC Stolwijk, Veronique AL Konijn, Anne Mensink, Natalie Proost, Maarten K Nijen Twilhaar, Tibor van Welsem, Negisa Seyed Toutounchi, Alsya J Affandi, Jip T van Dinter, Fred van Leeuwen, Joke MM den Haan

PMC · DOI: 10.26508/lsa.202603624 · 2026-03-18

## TL;DR

DOT1L, an epigenetic enzyme, influences the development of different types of dendritic cells and affects their immune functions.

## Contribution

This study reveals the differential role of DOT1L in regulating canonical dendritic cell subsets through its methyltransferase activity.

## Key findings

- DOT1L deletion reduces myeloid progenitors and increases cDC2s, while cDC1s remain unaffected.
- In vitro deletion of Dot1l leads to loss of pDCs and reduced IFNα production.
- DOT1L inhibition suppresses antigen presentation pathways in dendritic cells.

## Abstract

The epigenetic writer DOT1L guides the development of dendritic cells through its catalytic activity, differentially affecting canonical dendritic cell subsets.

Dendritic cells (DCs) orchestrate immune responses. Their development is controlled by transcription factors, but epigenetic mechanisms remain poorly understood. DOT1L emerges as a key epigenetic regulator in immune cells. Mapping DOT1L-mediated histone H3K79 methylation in canonical DC subsets revealed that DOT1L modified common and DC subset–specific genes. Deletion of Dot1l in vivo or in vitro decreased myeloid progenitors and increased cDC2s, whereas cDC1s remained unchanged. In addition, in vitro deletion of Dot1l led to loss of plasmacytoid DCs (pDCs) and of IFNα production upon stimulation. Upon in vivo deletion, a decrease in pDCs was only observed after subsequent in vitro expansion. This difference was likely related to insufficient replication-mediated loss of H3K79 methylation in vivo within the time frame studied. Transcriptomes of Dot1l-KO DC subsets exhibited enrichment of antigen presentation pathways, and MHC class II surface levels were up-regulated in pDCs. Mechanistically, inhibition of DOT1L linked the observed effects to its methyltransferase activity. Together, our data indicate that in DCs DOT1L differentially affects the development of canonical subsets and suppresses antigen presentation pathways.

## Linked entities

- **Genes:** DOT1L (DOT1 like histone lysine methyltransferase) [NCBI Gene 84444]
- **Proteins:** DOT1L (DOT1 like histone lysine methyltransferase)

## Full-text entities

- **Genes:** Cd19 (CD19 antigen) [NCBI Gene 12478], H2-DMb2 (histocompatibility 2, class II, locus Mb2) [NCBI Gene 15000] {aka H-2Mb2, H2-Mb2}, Kit (Kit proto-oncogene receptor tyrosine kinase) [NCBI Gene 16590] {aka Bs, CD117, Fdc, Gsfsco1, Gsfsco5, Gsfsow3}, Runx2 (runt related transcription factor 2) [NCBI Gene 12393] {aka AML3, CBF-alpha-1, Cbf, Cbfa-1, Cbfa1, LS3}, Cd40 (CD40 antigen) [NCBI Gene 21939] {aka Bp50, GP39, HIGM1, IGM, IMD3, T-BAM}, Mogat1 (monoacylglycerol O-acyltransferase 1) [NCBI Gene 68393] {aka 0610030A14Rik, 1110064N14Rik, Dgat2l, Dgat2l1, MGAT1, WI1-2612I11.1}, Tlr7 (toll-like receptor 7) [NCBI Gene 170743], Ifnb1 (interferon beta 1, fibroblast) [NCBI Gene 15977] {aka IFN-beta, IFNB, If1da1, Ifb}, Ciita (class II transactivator) [NCBI Gene 12265] {aka C2ta, EG669998, Gm9475, Mhc2ta}, Klrb1c (killer cell lectin-like receptor subfamily B member 1C) [NCBI Gene 17059] {aka CD161, Klrb1b, Ly-59, Ly55c, Ly59, NK-RP1}, Siglec1 (sialic acid binding Ig-like lectin 1, sialoadhesin) [NCBI Gene 20612] {aka Cd169, Siglec-1, Sn}, Fbxo11 (F-box protein 11) [NCBI Gene 225055] {aka Jf}, SIRPA (signal regulatory protein alpha) [NCBI Gene 140885] {aka BIT, CD172A, MFR, MYD-1, MYD1, P84}, ITGAX (integrin subunit alpha X) [NCBI Gene 3687] {aka CD11C, SLEB6}, Il7r (interleukin 7 receptor) [NCBI Gene 16197] {aka CD127, IL-7Ralpha}, DGAT2L6 (diacylglycerol O-acyltransferase 2 like 6) [NCBI Gene 347516] {aka DC3}, Kdm5c (lysine demethylase 5C) [NCBI Gene 20591] {aka D930009K15Rik, Jarid1c, Smcx, mKIAA0234}, HHT2 (histone H3) [NCBI Gene 855700], Mertk (MER proto-oncogene tyrosine kinase) [NCBI Gene 17289] {aka Eyk, Mer, Nyk, nmf12}, Itgam (integrin alpha M) [NCBI Gene 16409] {aka CD11b/CD18, CR3, CR3A, Cd11b, F730045J24Rik, Ly-40}, Esr1 (estrogen receptor 1 (alpha)) [NCBI Gene 13982] {aka ER, ER-alpha, ERa, ERalpha, ESR, Estr}, Hdac2 (histone deacetylase 2) [NCBI Gene 15182] {aka D10Wsu179e, YAF1, Yy1bp, mRPD3}, XCR1 (X-C motif chemokine receptor 1) [NCBI Gene 2829] {aka CCXCR1, GPR5}, Mapk3 (mitogen-activated protein kinase 3) [NCBI Gene 26417] {aka Erk-1, Erk1, Ert2, Esrk1, Mnk1, Mtap2k}, Spib (Spi-B transcription factor (Spi-1/PU.1 related)) [NCBI Gene 272382] {aka Spi-B}, Dnase1 (deoxyribonuclease I) [NCBI Gene 13419] {aka DNaseI, Dnl1}, C1qb (complement component 1, q subcomponent, beta polypeptide) [NCBI Gene 12260] {aka Adia}, Kmt2a (lysine (K)-specific methyltransferase 2A) [NCBI Gene 214162] {aka 6430520K01, ALL-1, All1, Cxxc7, HRX, HTRX1}, FLT3LG (fms related receptor tyrosine kinase 3 ligand) [NCBI Gene 2323] {aka FL, FLG3L, FLT3L, IMD125}, Cd86 (CD86 antigen) [NCBI Gene 12524] {aka B7, B7-2, B7.2, B70, CLS1, Cd28l2}, Vcam1 (vascular cell adhesion molecule 1) [NCBI Gene 22329] {aka CD106, Vcam-1}, Il23a (interleukin 23, alpha subunit p19) [NCBI Gene 83430] {aka IL-23, p19}, C1qa (complement component 1, q subcomponent, alpha polypeptide) [NCBI Gene 12259] {aka Adic, C1q}, Irf8 (interferon regulatory factor 8) [NCBI Gene 15900] {aka ICSBP, IRF-8, Icsbp1, Myls}, Gt(ROSA)26Sor (gene trap ROSA 26, Philippe Soriano) [NCBI Gene 14910] {aka Gtrgeo26, Gtrosa26, R26, ROSA26, Thumpd3as1}, Flt3l (FMS-like tyrosine kinase 3 ligand) [NCBI Gene 14256] {aka Flt3lg, Ly72L}, Thy1 (thymus cell antigen 1, theta) [NCBI Gene 21838] {aka CD90, T25, Thy-1, Thy-1.2, Thy1.1, Thy1.2}, IFNA1 (interferon alpha 1) [NCBI Gene 3439] {aka IFL, IFN, IFN-ALPHA, IFN-alphaD, IFNA13, IFNA@}, DOT1L (DOT1 like histone lysine methyltransferase) [NCBI Gene 84444] {aka DOT1, KMT4, NDNS}, Ly6g (lymphocyte antigen 6 family member G) [NCBI Gene 546644] {aka Gr-1, Gr1, Ly-6G}, Adgre1 (adhesion G protein-coupled receptor E1) [NCBI Gene 13733] {aka DD7A5-7, EGF-TM7, Emr1, F4/80, Gpf480, Ly71}, Runx1 (runt related transcription factor 1) [NCBI Gene 12394] {aka AML1, CBF-alpha-2, Cbfa2, Pebp2a2, Pebpa2b}, Kitl (kit ligand) [NCBI Gene 17311] {aka Clo, Con, Gb, Kitlg, Mgf, SCF}, C1qc (complement component 1, q subcomponent, C chain) [NCBI Gene 12262] {aka Adib, C1qg, Ciqc}, Ifna1 (interferon alpha 1) [NCBI Gene 15962] {aka If1ai14, Ifa1}, Notch2 (notch 2) [NCBI Gene 18129] {aka N2}, Cd80 (CD80 antigen) [NCBI Gene 12519] {aka B71, Cd28l, Ly-53, Ly53, MIC17, TSA1}, Tlr9 (toll-like receptor 9) [NCBI Gene 81897], BST2 (bone marrow stromal cell antigen 2) [NCBI Gene 684] {aka CD317, HM1.24, TETHERIN}, Itgax (integrin alpha X) [NCBI Gene 16411] {aka Cd11c, Cr4, N418}, Mki67 (antigen identified by monoclonal antibody Ki 67) [NCBI Gene 17345] {aka D630048A14Rik, Ki-67, Ki67}, Ifna (interferon alpha complex region) [NCBI Gene 111654] {aka Ifa, Ifa8}, Flt3 (FMS-like tyrosine kinase 3) [NCBI Gene 14255] {aka B230315G04, CD135, Flk-2, Flk2, Flt-3, Ly72}, Ly6c1 (lymphocyte antigen 6 family member C1) [NCBI Gene 17067] {aka Ly-6C, Ly-6C1, Ly6c}, Bcl11a (BCL11 transcription factor A) [NCBI Gene 14025] {aka 2810047E18Rik, BCL-11A, Ctip1, D930021L15Rik, Evi9, Evi9a}, H2-Ab1 (histocompatibility 2, class II antigen A, beta 1) [NCBI Gene 14961] {aka Abeta, H-2Ab, H2-Ab, I-Abeta, IAb, Ia-2}, Tcf4 (transcription factor 4) [NCBI Gene 21413] {aka 5730422P05Rik, ASP-I2, E2-2, E2.2, ITF-2, ITF-2b}, Foxm1 (forkhead box M1) [NCBI Gene 14235] {aka Fkh16, Foxm1b, HFH-11B, MPHOSPH2, Mpm2, WIN}, Hdac3 (histone deacetylase 3) [NCBI Gene 15183], Dot1l (DOT1 like histone lysine methyltransferase) [NCBI Gene 208266] {aka A630076O07, Dot1, KMT4, mDot1}
- **Diseases:** leukemia (MESH:D007938), pancreatic and colon cancer (MESH:D010190), diffuse large B cell lymphoma (MESH:D016403), DC (MESH:D054221), atherosclerotic (MESH:D050197), viral infections (MESH:D014777), cancer (MESH:D009369), pDC (MESH:D054740), ND (MESH:C537849), inflammation (MESH:D007249), CLPs (MESH:D054198)
- **Chemicals:** AF488 (-), Agarose (MESH:D012685), lidocaine (MESH:D008012), sodium deoxycholate (MESH:D003840), streptomycin (MESH:D013307), Triton X-100 (MESH:D017830), Nonidet P-40 (MESH:C010615), Ammonium (MESH:D064751), GlutaMAX (MESH:C054122), SDS (MESH:D012967), AF647 (MESH:C569686), KHCO3 (MESH:C026329), Hepes (MESH:D006531), EDTA (MESH:D004492), potassium (MESH:D011188), 2-mercaptoethanol (MESH:D008623), saponin (MESH:D012503), formaldehyde (MESH:D005557), TE (MESH:D013691), PBS (MESH:D007854), penicillin (MESH:D010406), DMSO (MESH:D004121), methanol (MESH:D000432), Tween-20 (MESH:D011136), tamoxifen (MESH:D013629), NaCl (MESH:D012965), 4-OHT (MESH:C032278), NH4Cl (MESH:D000643), 4-Hydroxytamoxifen (MESH:C016601), glycine (MESH:D005998)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606], Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932]
- **Cell lines:** C57BL/6 — Mus musculus (Mouse), Transformed cell line (CVCL_C0MU), S2 — Drosophila melanogaster (Fruit fly), Spontaneously immortalized cell line (CVCL_Z232), C57BL/6J — Mus musculus (Mouse), Transformed cell line (CVCL_C0MW)

## Figures

10 figures with captions in the complete paper: https://tomesphere.com/paper/PMC13000122/full.md

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Source: https://tomesphere.com/paper/PMC13000122