# The potential of plant-derived triterpenoids as biological nitrification inhibitors

**Authors:** Hugo Ribeiro, Evangelia S. Papadopoulou, Kunyang Zhang, Alexandros E. Kanellopoulos, Kalliope K. Papadopoulou, Dimitrios G. Karpouzas

PMC · DOI: 10.1007/s00253-026-13776-3 · 2026-03-17

## TL;DR

Plant triterpenoids show strong potential as nitrification inhibitors by targeting archaea, offering a sustainable way to reduce nitrogen losses in agriculture.

## Contribution

First experimental evidence of plant-derived triterpenoids as effective biological nitrification inhibitors, particularly against ammonia-oxidizing archaea.

## Key findings

- Six triterpenoids inhibited ammonia-oxidizing archaea by 29–100%, outperforming known inhibitors like sakuranetin.
- Triterpenoids showed no inhibition of ammonia-oxidizing bacteria, indicating selectivity for archaea.
- In silico models accurately predicted activity on bacteria but underestimated strong archaea inhibition, highlighting the need for improved datasets.

## Abstract

Biological nitrification inhibitors (BNIs) present an environmentally friendly approach to reduce nitrogen losses and enhance nitrogen use efficiency, with plant-derived triterpenoids emerging as promising candidates. We evaluated 18 triterpenoids as BNIs using in vitro assays with soil ammonia-oxidizing bacteria (AOB) (Nitrosospira multiformis, Nitrosomonas ureae) and archaea (AOA) (Nitrososphaera viennensis, Nitrosotalea sinensis) at high and low concentrations. A Graph Neural Network framework was applied to predict nitrification inhibition (NI) and identify structural features, including key functional groups, linked to inhibitory patterns. Triterpenoids were more active on AOA, demonstrating higher efficacy than sakuranetin (a known BNI), but did not inhibit AOB. Six triterpenoids showed inhibitory activity on AOA (29–100%), with 3-O-acetyl-11-keto-beta boswellic acid and 11-keto-beta boswellic acid as the most potent inhibitors (ammonia oxidation inhibition > 94%), followed by echinocystic acid (> 87%), ursolic acid (> 74%), asiatic acid (> 65%), and echinocystic acid-3-O-glucoside (29–94%). In silico analyses predicted accurately the activity of model inhibitors such as DMPP, MHPP, and ethoxyquin on AOB and AOA, respectively, and the limited activity of triterpenoids on AOB, but did not predict their strong inhibitory effects on AOA, underscoring the need for expanded datasets for model refinement. The selective activity of some triterpenoids on AOA is hypothesized to involve interference with 3-hydroxy-3-methylglutaryl-CoA reductase, a key enzyme in archaeal membrane biosynthesis, although this requires experimental validation. Still, strain-specific responses suggest the involvement of additional mechanisms. This study provides the first experimental evidence for the potential of plant-derived triterpenoids as BNIs, supporting their relevance for sustainable agriculture.

• Triterpenoids strongly inhibited AOA but had no effect on AOB nitrification activity.

• Six ursane/oleanane-type triterpenoids showed strong AOA inhibition beyond known BNIs.

• Inhibition patterns suggest triterpenoid structure relates to AOA selectivity.

The online version contains supplementary material available at 10.1007/s00253-026-13776-3.

## Linked entities

- **Chemicals:** 3-O-acetyl-11-keto-beta boswellic acid (PubChem CID 11168203), 11-keto-beta boswellic acid (PubChem CID 6918114), echinocystic acid (PubChem CID 73309), ursolic acid (PubChem CID 64945), asiatic acid (PubChem CID 119034), echinocystic acid-3-O-glucoside (PubChem CID 476537), DMPP (PubChem CID 5911), ethoxyquin (PubChem CID 3293), sakuranetin (PubChem CID 73571)
- **Species:** Nitrosospira multiformis (taxon 1231), Nitrosomonas ureae (taxon 44577), Nitrososphaera viennensis (taxon 1034015), Nitrosotalea sinensis (taxon 1499975)

## Full-text entities

- **Diseases:** AOB (MESH:C000719206), AOA (MESH:D020165), NI (MESH:C565433)
- **Chemicals:** mevalonate (MESH:D008798), linolenic acid (MESH:D017962), CO2 (MESH:D002245), Triterpenoids (MESH:D014315), Simvastatin (MESH:D019821), 2-methoxy-1,4-naphthoquinone (MESH:C096118), amine (MESH:D000588), glucoside (MESH:D005960), sorgoleone (MESH:C113738), ammonium (MESH:D064751), steroids (MESH:D013256), cucurbitacin I (MESH:C038106), alkaloids (MESH:D000470), pyruvate (MESH:D019289), cucurbitacin B (MESH:C041246), Betulinic acid (MESH:D000094062), Cucurbitacin D (MESH:C038105), methyl linoleate (MESH:C005575), syringic acid (MESH:C001945), phenol red (MESH:D010637), Ethoxyquin (MESH:D005015), Ammonia (MESH:D000641), tannins (MESH:D013634), 2,3-oxidosqualene (MESH:C002821), copper (MESH:D003300), Beta-boswellic acid (MESH:C054625), aglycone (MESH:C458179), MES (MESH:C004550), HEPES (MESH:D006531), lipid (MESH:D008055), N (MESH:D009584), NH4Cl (MESH:D000643), cucurbitacins (MESH:D054728), DMPP (MESH:D004246), Betulin (MESH:C002503), Nitrite (MESH:D009573), caffeic acid (MESH:C040048), 11-keto-beta boswellic acid (MESH:C447943), DCD (MESH:C004711), (NH4)2SO4 (MESH:D000645), sterols (MESH:D013261), water (MESH:D014867), Ursolic acid (MESH:C005466), N2O (MESH:D009609), ursane (MESH:C000606873), azole (MESH:D001393), Asiatic acid (MESH:C017032), hydroxylamine (MESH:D019811), BNI (-), thione (MESH:D013871), glycerol-1-phosphate (MESH:C029620), reactive oxygen species (MESH:D017382), nitrate (MESH:D009566), linoleic acid (MESH:D019787), Oleanolic acid (MESH:D009828), saponin (MESH:D012503), diterpenoid (MESH:D004224), monoterpenes (MESH:D039821), I (MESH:D007455), 3-O-acetyl-beta boswellic acid (MESH:C459792)
- **Species:** Nitrosomonas ureae (species) [taxon 44577], Nitrosomonadales (order) [taxon 32003], Sorghum bicolor (broomcorn, species) [taxon 4558], Neotetracus sinensis (Shrew gymnure, species) [taxon 977878], Nitrososphaera viennensis (species) [taxon 1034015], Nitrososphaera viennensis EN76 (strain) [taxon 926571], Nitrosotalea sinensis (species) [taxon 1499975], Ammonia (genus) [taxon 29189], Zea mays (maize, species) [taxon 4577], Urochloa humidicola (species) [taxon 240451], Oryza sativa (Asian cultivated rice, species) [taxon 4530], Nitrosospira sp. (species) [taxon 38080], Nitrosotalea devaniterrae (species) [taxon 1078905], Nitrosospira multiformis (species) [taxon 1231], Nitrosospira multiformis ATCC 25196 (strain) [taxon 323848], Nitrosomonas europaea (species) [taxon 915], Arabidopsis thaliana (mouse-ear cress, species) [taxon 3702]
- **Cell lines:** S2 — Drosophila melanogaster (Fruit fly), Spontaneously immortalized cell line (CVCL_Z232)

## Figures

9 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12999751/full.md

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Source: https://tomesphere.com/paper/PMC12999751