# CRISPR gene editing of AtRING1 unravels a critical role of RAWUL domain in PRC1 repression of transcription

**Authors:** Qiannan Wang, Donghong Chen, Alexandre Berr, Wen‐Hui Shen

PMC · DOI: 10.1111/tpj.70794 · 2026-03-18

## TL;DR

This study uses CRISPR to show that the RAWUL domain of AtRING1 is crucial for PRC1's role in gene repression in Arabidopsis.

## Contribution

The study reveals the RAWUL domain's role in PRC1 activity and its facilitation of PRC2 function in epigenetic silencing.

## Key findings

- The atring1ko mutant shows embryonic callus-like structures, indicating AtRING1's essential role in cell differentiation.
- The RAWUL domain fine-tunes PRC1 activity and influences H2Aub1 and H3K27me3 deposition at specific loci.

## Abstract

Polycomb Group (PcG) proteins, including members of Polycomb Repressive Complex 1 and 2 (PRC1 and PRC2), regulate many key developmental processes through transcriptional gene repression. While the molecular mechanisms of PRC2 and its histone methyltransferase involved in depositing histone 3 lysine 27 trimethylation (H3K27me3) are well understood, the components and E3 ubiquitin ligase functions of PRC1 in plants remain largely elusive. In Arabidopsis, AtRING1 is a key PRC1 component, containing an N‐terminal RING‐finger domain and a C‐terminal RAWUL domain. Previous studies have relied on T‐DNA insertion mutants in the investigation of AtRING1 function. By editing AtRING1A using CRISPR/Cas9 technology in the atring1b‐1 background, here we have generated and characterized one N‐terminal stop mutant atring1

ko
 and two C‐terminal deletion mutants atring1
▵C‐terminal
 lacking the RAWUL domain. We show evidence that atring1

ko
 represents the strongest loss‐of‐function mutant, exhibiting embryonic callus‐like structures, demonstrating the essential role of AtRING1 in cell differentiation. Remarkably, the atring1
▵C‐terminal
 mutants exhibit mild developmental defects, suggesting that the RING domain alone retains partial function, while the RAWUL domain fine‐tunes PRC1 activity. Our molecular analyses support a model in which AtRING1/PRC1‐mediated H2A monoubiquitination (H2Aub1) often precedes PRC2‐mediated H3K27me3 deposition at some target loci. Strikingly, the RAWUL domain is required for efficient H2Aub1 enrichment and influences H3K27me3 deposition in a locus‐specific manner. Taken together, our study provides new insights into the molecular mechanism underlying PRC1 E3 ligase activity, supporting that PRC1 function facilitates PRC2 activity in epigenetic gene silencing.

The mechanism of how AtRING1, a key PRC1 component, regulates Arabidopsis development is far from clear. The new atring1

ko
 mutant generated by using CRIPSR/Cas9 exhibits embryonic callus phenotype, demonstrating an essential role of AtRING1 in cell differentiation. Its C‐terminal RAWUL domain fine‐tunes PRC1 activity in facilitating H2Aub1 deposition, which precedes PRC2‐mediated H3K27me3 deposition and influences its accumulation at some specific gene loci.

## Linked entities

- **Genes:** RING1 (RING/U-box superfamily protein) [NCBI Gene 830902], RING1A (RING 1A) [NCBI Gene 834451], RING1B (RING 1B) [NCBI Gene 839413]
- **Proteins:** PRC1 (protein regulator of cytokinesis 1), prc2 (protein regulator of cytokinesis 2)
- **Species:** Arabidopsis (taxon 3701)

## Full-text entities

- **Genes:** RING1 (ring finger protein 1) [NCBI Gene 6015] {aka RING1A, RNF1}, PRC1 (protein regulator of cytokinesis 1) [NCBI Gene 9055] {aka ASE1, MAP65}, ABI3 (AP2/B3-like transcriptional factor family protein) [NCBI Gene 822061] {aka ABA INSENSITIVE 3, ABSCISIC ACID INSENSITIVE 3, AtABI3, SIS10, SUGAR INSENSITIVE 10}, AT3G06710 (E3 ubiquitin ligase) [NCBI Gene 819856] {aka T8E24.2}, FLC (K-box region and MADS-box transcription factor family protein) [NCBI Gene 830878] {aka AGAMOUS-like 25, AGL25, FLF, FLOWERING LOCUS C, FLOWERING LOCUS F, MADS BOX PROTEIN FLOWERING LOCUS F}, RING1 (RING/U-box superfamily protein) [NCBI Gene 830902] {aka ATRING1, F12B17.270, F12B17_270}, MAF4 (K-box region and MADS-box transcription factor family protein) [NCBI Gene 836631] {aka AGAMOUS-like 69, AGL69, F15O5.3, F15O5_3, FCL4, MADS AFFECTING FLOWERING 4}, CUC1 (NAC (No Apical Meristem) domain transcriptional regulator superfamily protein) [NCBI Gene 820748] {aka ANAC054, ATNAC1, Arabidopsis NAC domain containing protein 54, CUP-SHAPED COTYLEDON1}, CESA6 (cellulose synthase 6) [NCBI Gene 836595] {aka E112, ISOXABEN RESISTANT 2, IXR2, MVP7.7, MVP7_7, PRC1}, H2AC18 (H2A clustered histone 18) [NCBI Gene 8337] {aka H2A, H2A.2, H2A/O, H2A/q, H2AFO, H2a-615}, KNAT2 (homeobox knotted-like protein) [NCBI Gene 843388] {aka ARABIDOPSIS THALIANA KN 1, ATK1, F24J13.8, F24J13_8, KNOTTED-like from Arabidopsis thaliana 2}, CUC2 (NAC (No Apical Meristem) domain transcriptional regulator superfamily protein) [NCBI Gene 835478] {aka ANAC098, ATCUC2, Arabidopsis NAC domain containing protein 98, CUP-SHAPED COTYLEDON 2, K19P17.12, K19P17_12}, MAF5 (K-box region/MADS-box transcription factor family protein) [NCBI Gene 836632] {aka AGAMOUS-like 68, AGL68, F15O5.4, F15O5_4, MADS AFFECTING FLOWERING 5}, CRU3 (cruciferin 3) [NCBI Gene 828970] {aka CRC, CRUCIFERIN C, F20O9.210, F20O9_210, cruciferin 3}, RING1B (RING 1B) [NCBI Gene 839413] {aka ARABIDOPSIS THALIANA RING 1B, ATRING1B, F21M11.32, F21M11_32, RING 1B}, CRA1 (RmlC-like cupins superfamily protein) [NCBI Gene 834435] {aka 12S STORAGE PROTEIN, ATCRA1, CRU1, CRUCIFERINA, MLN1.4, MLN1_4}, BMI1 (BMI1 proto-oncogene, polycomb ring finger) [NCBI Gene 648] {aka FLVI2/BMI1, PCGF4, RNF51, flvi-2/bmi-1}, RING1A (RING 1A) [NCBI Gene 834451] {aka ARABIDOPSIS THALIANA RING 1A, ATRING1A, K9L2.3, K9L2_3, RING 1A}, AGL20 (AGAMOUS-like 20) [NCBI Gene 819174] {aka AGAMOUS-like 20, ATSOC1, F17K2.19, MADS-BOX PROTEIN AGL20, SOC1, SUPPRESSOR OF OVEREXPRESSION OF CO 1}, TIP4;1 (tonoplast intrinsic protein 4;1) [NCBI Gene 817123] {aka F17H15.16, F17H15_16, tonoplast intrinsic protein 4;1}, DOG1 (delay of germination 1) [NCBI Gene 834623] {aka ATDOG1, DELAY OF GERMINATION 1, GAAS5, GLUCOSE SENSING QTL 5, GSQ5, K15I22.3}, PER1 (1-cysteine peroxiredoxin 1) [NCBI Gene 841231] {aka 1-CYS PEROXIREDOXIN, 1-cysteine peroxiredoxin 1, ATPER1, F21D18.15, F21D18_15}
- **Diseases:** Gynoecium defects (MESH:D000013), ABA hypersensitivity (MESH:D004342), embryonic lethality (MESH:D020964), developmental defects (MESH:D000094602)
- **Chemicals:** sucrose (MESH:D013395), Fat red (MESH:C046548), NaCl (MESH:D012965), urea (MESH:D014508), water (MESH:D014867), T3 (MESH:D014284), carbenicillin (MESH:D002228), hygromycin (MESH:C026273), SDS (MESH:D012967), MgCl2 (MESH:D015636), H2SO4 (MESH:C033158), agar (MESH:D000362), EDTA (MESH:D004492), TCA (MESH:D014238), CRIPSR (-), PVDF (MESH:C024865), Triton X-100 (MESH:D017830), Ethanol (MESH:D000431), acetone (MESH:D000096)
- **Species:** Agrobacterium tumefaciens (species) [taxon 358], Drosophila melanogaster (fruit fly, species) [taxon 7227], Mus musculus (house mouse, species) [taxon 10090], Arabidopsis thaliana (mouse-ear cress, species) [taxon 3702]
- **Mutations:** insertion at position 1131, insertion at position 44
- **Cell lines:** Col-0 — Homo sapiens (Human), Familial hypertrophic cardiomyopathy type 26, Induced pluripotent stem cell (CVCL_A6XE)

## Figures

9 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12999195/full.md

---
Source: https://tomesphere.com/paper/PMC12999195