# Proteomic dynamics of bull sperm during post-testicular maturation

**Authors:** Inês Leites, Patrícia Diniz, Margarida Fardilha, Joana Santiago, Graça Ferreira-Dias, Luís Lopes-da-Costa, Elisabete Silva

PMC · DOI: 10.1186/s12864-026-12614-0 · BMC Genomics · 2026-02-12

## TL;DR

This study maps changes in bull sperm proteins during maturation, revealing shifts in function and metabolism as sperm move through the epididymis.

## Contribution

The study provides a detailed comparative proteomic profile of bull sperm at different maturation stages, revealing novel insights into sperm function and histone dynamics.

## Key findings

- Sperm proteomes show distinct biological processes at each maturation stage, including post-transcriptional regulation in testicular sperm and OXPHOS in cauda epididymal sperm.
- Histone replacement by protamines is not completed in the testis but continues through epididymal transit, with histone modifying enzymes detected in caput sperm.
- The ubiquitin–proteasome system is significantly enriched in conserved sperm proteomes across species, suggesting a role in proteomic remodeling.

## Abstract

Mammalian sperm maturation during epididymal transit is driven by sequential interactions with the epididymal environment allowing the acquisition, loss and modification of sperm protein content. We report a comparative proteomic profile of testicular, caput and cauda epididymal spermatozoa using shotgun proteomics. Analysis rendered 2,305 proteins in testicular sperm (TestSperm), 2,554 in caput epididymal sperm (CaputSperm) and 2,038 in cauda epididymal sperm (CaudaSperm), including 702, 483 and 314 unique proteins, respectively. Gene Ontology (GO) enrichment analysis of total proteomes and unique proteins from each population allowed us to map biological processes (BP) to spermatozoa with sequential degrees of maturation. TestSperm was mostly enriched in processes related to post-transcriptional regulation, that may be reminiscent mechanisms to regulate spermatogenesis and sperm differentiation. GO enrichment analysis of BP in CaputSperm proteome identified a significant enrichment of integrin-mediated and non-classical endocytic pathways may be aiding in sperm-epididymosome interaction and vesicle fusion events. CaudaSperm was significantly enriched in BP related to specific sperm functions (motility, fertilization) and associated to oxidative phosphorylation (OXPHOS) reflecting that sperm maturation involves a transition from a glycolytic metabolism (prevalent in testicular sperm) to being more dependent on OXPHOS, as ejaculated sperm. An in silico analysis further revealed how proteins are associated with specific sperm functions/events (motility, acrosome reaction/capacitation, fertilization and embryo development). Most proteins related to these functions seem to be present since the testicular phase and maintained through maturation. Interestingly, ubiquitin–proteasome system (UPS) catabolic processes appear to be significantly enriched in the conserved epididymal sperm proteome across species. Finally, we identified several sperm histones and variants and, together with an in silico analysis, we also identified histone modifying enzymes in each sperm population. Contrarily to common believe, our results suggest that histone replacement by protamines is not completed in the testis and continues through epididymal transit. Detection of histone modifying enzymes in CaputSperm suggests that histone PTMs might be more prevalent in caput epididymis where they may play a role in achieving the necessary balance between histone eviction and retainment. Our study emphasizes the pivotal role that sperm proteomic remodeling plays in post-testicular maturation, in the sequential acquisition of competence.

The online version contains supplementary material available at 10.1186/s12864-026-12614-0.

## Linked entities

- **Proteins:** scb (scab)
- **Species:** Bos taurus (taxon 9913)

## Full-text entities

- **Genes:** NDUFA8 (NADH:ubiquinone oxidoreductase subunit A8) [NCBI Gene 327710], Emilin1 (elastin microfibril interfacer 1) [NCBI Gene 100952] {aka 5830419M17Rik, EMILIN-1, gp115}, Enkur (enkurin, TRPC channel interacting protein) [NCBI Gene 71233] {aka 4933434I06Rik}, TRIM28 (tripartite motif containing 28) [NCBI Gene 10155] {aka KAP1, PPP1R157, RNF96, TF1B, TIF1B, TIF1beta}, H2AC8 (H2A clustered histone 8) [NCBI Gene 3012] {aka H2A.1, H2A.2, H2A/a, H2AFA, HIST1H2AE}, Vcp (valosin containing protein) [NCBI Gene 269523] {aka 3110001E05, CDC48, p97, p97/VCP}, BCS1L (BCS1 homolog, ubiquinol-cytochrome c reductase complex chaperone) [NCBI Gene 539713], Lama5 (laminin, alpha 5) [NCBI Gene 16776] {aka [a]5, laminin-511, mKIAA0533}, LMNB1 (lamin B1) [NCBI Gene 4001] {aka ADLD, LMN, LMN2, LMNB, MCPH26}, DEFB1 (defensin beta 1) [NCBI Gene 1672] {aka BD1, DEFB-1, DEFB101, HBD1}, Rsph9 (radial spoke head 9 homolog (Chlamydomonas)) [NCBI Gene 75564] {aka 1700027N10Rik}, TBPL1 (TATA-box binding protein like 1) [NCBI Gene 9519] {aka MGC:8389, MGC:9620, STUD, TLF, TLP, TRF2}, H2BC10 (H2B clustered histone 10) [NCBI Gene 8346] {aka H2B/k, H2BC4, H2BC6, H2BC7, H2BC8, H2BFK}, TNP2 (transition protein 2) [NCBI Gene 7142] {aka TP2}, Gpi1 (glucose-6-phosphate isomerase 1) [NCBI Gene 14751] {aka Amf, Gpi, Gpi-1, Gpi-1r, Gpi-1s, Gpi-1t}, AGT (angiotensinogen) [NCBI Gene 183] {aka ANHU, SERPINA8, hFLT1}, ND2 (NADH dehydrogenase subunit 2) [NCBI Gene 3283878], LAMA4 (laminin subunit alpha 4) [NCBI Gene 3910] {aka CMD1JJ, LAMA3, LAMA4*-1}, EQTN (equatorin) [NCBI Gene 54586] {aka AFAF, C9orf11, SPACA8}, Vdac2 (voltage-dependent anion channel 2) [NCBI Gene 22334] {aka Vdac6, mVDAC2, mVDAC6}, Hk1 (hexokinase 1) [NCBI Gene 15275] {aka Hk-1, Hk1-s, dea, mHk1-s}, XAB2 (XPA binding protein 2) [NCBI Gene 56949] {aka HCNP, HCRN, NTC90, SYF1}, Ccin (calicin) [NCBI Gene 442829] {aka 4933417A14Rik}, KEAP1 (kelch like ECH associated protein 1) [NCBI Gene 9817] {aka INrf2, KLHL19}, RAC1 (Rac family small GTPase 1) [NCBI Gene 5879] {aka MIG5, MRD48, Rac-1, TC-25, p21-Rac1}, Ccdc40 (coiled-coil domain containing 40) [NCBI Gene 207607] {aka B930008I02Rik}, POTEKP (POTE ankyrin domain family member K, pseudogene) [NCBI Gene 440915] {aka ACT, ACTBL3, POTE2delta, POTEK}, Fermt2 (fermitin family member 2) [NCBI Gene 218952] {aka Kindlin-2, Mig2, Plekhc1}, ZPBP (zona pellucida binding protein) [NCBI Gene 11055] {aka SPGF66, ZPBP1}, EEF1D (eukaryotic translation elongation factor 1 delta) [NCBI Gene 1936] {aka EF-1D, EF1D, FP1047, NEDTCHAL}, YTHDF1 (YTH N6-methyladenosine RNA binding protein F1) [NCBI Gene 54915] {aka C20orf21, DF1}, RFX2 (regulatory factor X2) [NCBI Gene 5990], ILF3 (interleukin enhancer binding factor 3) [NCBI Gene 3609] {aka CBTF, DRBF, DRBP76, MMP4, MPHOSPH4, MPP4}, Lgals3bp (lectin, galactoside-binding, soluble, 3 binding protein) [NCBI Gene 19039] {aka 90K, CyCAP, MAC-2BP, Ppicap, Tango10b}, ROPN1L (rhophilin associated tail protein 1 like) [NCBI Gene 83853] {aka ASP, LINC01513, RSPH11, TCONS_00009352}, SNRPA (small nuclear ribonucleoprotein polypeptide A) [NCBI Gene 6626] {aka Mud1, U1-A, U1A}, MMRN1 (multimerin 1) [NCBI Gene 22915] {aka ECM, EMILIN4, GPIa*, MMRN}, Tcp1 (t-complex protein 1) [NCBI Gene 21454] {aka CCT, Cct1, Ccta, TRic, Tcp-1, Tp63}, Cct4 (chaperonin containing TCP1 subunit 4) [NCBI Gene 12464] {aka 2610204B21Rik, A45, Cctd}, Sord (sorbitol dehydrogenase) [NCBI Gene 20322] {aka SDH, Sdh-1, Sdh1, Sodh-1, XDH}, NECTIN2 (nectin cell adhesion molecule 2) [NCBI Gene 5819] {aka CD112, HVEB, PRR2, PVRL2, PVRR2}, ENO1 (enolase 1) [NCBI Gene 2023] {aka ENO1-IT1, ENO1L1, HEL-S-17, MPB1, NNE, PPH}, SPA17 (sperm autoantigenic protein 17) [NCBI Gene 53340] {aka CT22, SP17, SP17-1}, IZUMO3 (IZUMO family member 3) [NCBI Gene 100129669] {aka C9orf134, bA20A20.1}, CEP192 (centrosomal protein 192) [NCBI Gene 55125] {aka PPP1R62}, Cct5 (chaperonin containing TCP1 subunit 5) [NCBI Gene 12465] {aka CCT-epsilon, Ccte, TCP-1-epsilon, TCPE, mKIAA0098}, H3C14 (H3 clustered histone 14) [NCBI Gene 126961] {aka H3, H3.2, H3/M, H3F2, H3FM, H3FN}, Spesp1 (sperm equatorial segment protein 1) [NCBI Gene 66712] {aka 4921508E09Rik}, Ropn1l (ropporin 1-like) [NCBI Gene 252967] {aka ASP, Akapasp}, ILF2 (interleukin enhancer binding factor 2) [NCBI Gene 3608] {aka NF45, PRO3063}, HK1 (hexokinase 1) [NCBI Gene 3098] {aka CNSHA5, HK, HK1-ta, HK1-tb, HK1-tc, HKD}, H2AC21 (H2A clustered histone 21) [NCBI Gene 317772] {aka H2AB, HIST2H2AB}, IZUMO1 (izumo sperm-oocyte fusion 1) [NCBI Gene 284359] {aka IZUMO, OBF}, SNRPA1 (small nuclear ribonucleoprotein polypeptide A') [NCBI Gene 6627] {aka Lea1, U2A'}, CWF19L2 (CWF19 like cell cycle control factor 2) [NCBI Gene 143884], Zpbp2 (zona pellucida binding protein 2) [NCBI Gene 69376] {aka 1700017D11Rik, 2610022C02Rik, ZPBPL}, CENPA (centromere protein A) [NCBI Gene 1058] {aka CENP-A, CenH3}, TENT5C (terminal nucleotidyltransferase 5C) [NCBI Gene 54855] {aka FAM46C}, Tssk4 (testis-specific serine kinase 4) [NCBI Gene 71099] {aka 1700020B19Rik, 4933424F08Rik, TSK-4, TSSK-4}, NDUFC2 (NADH:ubiquinone oxidoreductase subunit C2) [NCBI Gene 338046]
- **Diseases:** RP (MESH:D012174), Cauda (MESH:D011128), HCD (MESH:D065630), PNGaseF (OMIM:102510)
- **Chemicals:** TFA (MESH:D014269), CPT (MESH:C000708228), luminal (MESH:D010634), ACN (-), ND (MESH:D009354), tricarboxylic acid (MESH:D014233), methionine (MESH:D008715), ethanol (MESH:D000431), Triton-X (MESH:D017830), acid (MESH:D000143), Carnitine (MESH:D002331), SDS (MESH:D012967), TEAB (MESH:C041737), EDTA (MESH:D004492), pentose phosphate (MESH:D010428), Acetonitrile (MESH:C032159), TCP (MESH:C049563), ROS (MESH:D017382), methanol (MESH:D000432), Peptides (MESH:D010455), Phosphoric acid (MESH:C030242), PBS (MESH:D007854), cysteine (MESH:D003545), glutathione (MESH:D005978), Pyruvate (MESH:D019289), chloroacetamide (MESH:C013874), ATP (MESH:D000255), NaHCO3 (MESH:D017693), water (MESH:D014867), BCA (MESH:C047117), NH4Cl (MESH:D000643), NaCl (MESH:D012965), FA (MESH:C030544)
- **Species:** Bos taurus (bovine, species) [taxon 9913], Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606], Sus scrofa (pig, species) [taxon 9823]
- **Cell lines:** Caput — Mus musculus (Mouse), Conditionally immortalized cell line (CVCL_6B05)

## Full text

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## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12997868/full.md

## References

13 references — full list in the complete paper: https://tomesphere.com/paper/PMC12997868/full.md

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Source: https://tomesphere.com/paper/PMC12997868