# Genomic Insights into Hybridization and Speciation of Mitten Crabs in the Eriocheir Genus

**Authors:** Jun Wang (王军), Xin Hou (侯鑫), Xiaowen Chen (陈晓雯), Roland Nathan Mandal, Nusrat Hasan Kanika, Chunhong Yuan (袁春红), Yongju Luo (罗永巨), Chenghui Wang (王成辉)

PMC · DOI: 10.1093/gpbjnl/qzaf079 · Genomics, Proteomics & Bioinformatics · 2025-09-15

## TL;DR

This study explores how hybridization shaped the evolution of mitten crabs, revealing new species and genomic adaptations.

## Contribution

The paper presents genomic evidence of hybridization leading to distinct ecological species in the Eriocheir genus.

## Key findings

- Hybridization between Chinese and Japanese mitten crabs produced two new ecological species with unique genomic structures.
- Genes related to reproduction and temperature adaptation showed signs of divergent selection and selective sweeps.
- Hepu mitten crab is identified as a homoploid hybrid species from an ancient hybridization event.

## Abstract

Hybridization is a prominent and influential phenomenon with significant implications for adaptive evolution, species distribution, and biodiversity. However, the intricacies of how hybridization influences genomic structure and facilitates adaptive evolution remain poorly understood. By analyzing whole-genome data from seven populations within the Eriocheir genus across diverse geographic regions, we validated a complex hybridization history between Chinese and Japanese mitten crabs. This hybridization gave rise to two distinct ecological species: Hepu and Russian mitten crabs with unique genomic architectures and adaptations. Genes related to reproduction, development, and temperature adaptation exhibited divergent selection signals, potentially contributing to their phenotypic diversity and ecological niches. Meanwhile, genes associated with reproduction, namely Birc6, Bap31, and Poxn, displayed robust evidence of selective sweeps in Hepu mitten crab. Notably, the favored alleles for these genes originated from the parental lineages during the hybridization process. Furthermore, Hepu mitten crab is a homoploid hybrid species that originated from an ancient hybridization event, resolving its longstanding taxonomic controversy. Our study sheds light on the evolutionary history of mitten crabs and highlights the crucial role of hybridization in driving adaptation, range expansion, and diversification within the Eriocheir genus.

## Linked entities

- **Genes:** BIRC6 (baculoviral IAP repeat containing 6) [NCBI Gene 57448], BCAP31 (B cell receptor associated protein 31) [NCBI Gene 10134], Poxn (Pox neuro) [NCBI Gene 36741]
- **Species:** Eriocheir (taxon 95601)

## Full-text entities

- **Genes:** Cytochrome C Oxidase Subunit II [NCBI Gene 7055926]
- **Diseases:** XP (MESH:D014983)
- **Chemicals:** lipid (MESH:D008055)
- **Species:** Portunus trituberculatus (Japanese blue crab, species) [taxon 210409], Daphnia pulex (common water flea, species) [taxon 6669], Scylla paramamosain (green mud crab, species) [taxon 85552], Penaeus vannamei (Pacific white shrimp, species) [taxon 6689], Parhyale hawaiensis (species) [taxon 317513], Procambarus clarkii (red swamp crayfish, species) [taxon 6728], Mus musculus (house mouse, species) [taxon 10090], Caenorhabditis elegans (species) [taxon 6239], Homarus americanus (American lobster, species) [taxon 6706], Lepeophtheirus salmonis (salmon louse, species) [taxon 72036], E. japonica [taxon 160899], Homo sapiens (human, species) [taxon 9606], Hyalella azteca (species) [taxon 294128], Eriocheir hepuensis (species) [taxon 168195], Eriocheir sinensis (Chinese hairy crab, species) [taxon 95602], Eriocheir japonica (Japanese mitten crab, species) [taxon 95603], Daphnia magna (species) [taxon 35525], Drosophila melanogaster (fruit fly, species) [taxon 7227]
- **Mutations:** c.732A>G, isoleucine to methionine, methionine to leucine, Pro to Leu, Asp642His, G-to-A, aspartic acid to histidine, c.269 C>G, Thr to Ser, c.1924 G>C, Ile244Met, A-to-C mutation at position 1891, Met631Leu, c.338 C>T
- **Cell lines:** Hepu-HP — Homo sapiens (Human), Hepatoblastoma, Cancer cell line (CVCL_M170), DW- — Homo sapiens (Human), Primary peritoneal serous papillary adenocarcinoma, Cancer cell line (CVCL_A1IA)

## Full text

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## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12996911/full.md

## References

93 references — full list in the complete paper: https://tomesphere.com/paper/PMC12996911/full.md

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Source: https://tomesphere.com/paper/PMC12996911