# Distribution and evolution of the LysR-type transcriptional regulators of the Salmonella genus

**Authors:** Dávila S., Rivera-Ramírez A., Gama-Martínez Y., Orozco R., Hernández V. M., Hernández-Lucas I., Priyanka Sharma, Priyanka Sharma, Priyanka Sharma, Priyanka Sharma

PMC · DOI: 10.1371/journal.pone.0344260 · PLOS One · 2026-03-17

## TL;DR

This paper explores how LysR-type transcriptional regulators are distributed and evolved in different Salmonella species, revealing patterns linked to host adaptation.

## Contribution

The study identifies a Salmonella LTTR core and highlights parallel evolution of CysB in Enterobacteriales.

## Key findings

- LTTRs are highly abundant in human-infecting Salmonella serovars like S. Typhi.
- LTTRs decrease in reptile-associated Salmonella subspecies.
- CysB orthologs form genus-specific clades, suggesting parallel evolution.

## Abstract

LysR-type transcriptional regulators (LTTRs) are one of the most abundant transcriptional regulators in nature and are involved in multiple essential biological process in bacteria. In this work we show that LTTRs are highly abundant in Salmonella enterica subspecies enterica serovars able to infect humans (S. Typhi), whereas the number of LTTRs decreases substantially in reptile commensals (Salmonella enterica subspecies arizonae, diarizonae, houtenae, indica, salamae and Salmonella bongori). In addition, it is also reported the presence of a Salmonella LTTR core, LTTRs exclusive to the Salmonella genus and LTTRs like CysB that is widely distributed in the Enterobacteriales order and their orthologous sequences separate clades at the genus level, suggesting that CysB has evolved in parallel with the corresponding lineage. Therefore, there are LTTRs that evolved as part of the core of microorganisms that provide essential genetic functions to the cell, as well as a LTTR accessory pool that provides different capabilities to specific microorganisms for survival in nature and in different environments of the host.

## Linked entities

- **Proteins:** CYSB (cystatin B)
- **Species:** Salmonella bongori (taxon 54736)

## Full-text entities

- **Genes:** SpvR [NCBI Gene 13909715]
- **Diseases:** LTTR (MESH:C564833), bacteremia (MESH:D016470), deaths (MESH:D003643), depression (MESH:D003866), infection (MESH:D007239), gastroenteritis (MESH:D005759), typhoid fever (MESH:D014435), diarrhea (MESH:D003967), nosocomial infections (MESH:D003428), cystic fibrosis (MESH:D003550)
- **Chemicals:** zinc (MESH:D015032), xanthosine (MESH:C005893), iron (MESH:D007501), sulfite (MESH:D013447), threonine (MESH:D013912), oxygen (MESH:D010100), molybdenum (MESH:D008982), purine (MESH:C030985), HypT (-), hypochlorous acid (MESH:D006997), serine (MESH:D012694), nitrogen (MESH:D009584), c-di-GMP (MESH:C062025), itaconic acid (MESH:C005229), copper (MESH:D003300), sulfur (MESH:D013455), amino acid (MESH:D000596), cys (MESH:D003545), Na + (MESH:D012964), TdcA (MESH:C024158)
- **Species:** Shigella (genus) [taxon 620], Sinorhizobium meliloti (species) [taxon 382], Cronobacter (genus) [taxon 413496], Yersinia (genus) [taxon 444888], Pseudomonadota (proteobacteria, phylum) [taxon 1224], Salmonella enterica subsp. enterica (subspecies) [taxon 59201], Salmonella bongori (species) [taxon 54736], Mycobacterium tuberculosis (species) [taxon 1773], Homo sapiens (human, species) [taxon 9606], Bacteria Latreille et al. 1825 (Bacteria stick insect, genus) [taxon 629395], Salmonella enterica subsp. enterica serovar Typhi (no rank) [taxon 90370], Enterobacterales (order) [taxon 91347], Candidatus Blochmanniella floridana (species) [taxon 203907], Bdellovibrio sp. ETA (species) [taxon 242951], Salmonella enterica subsp. diarizonae (subspecies) [taxon 59204], Salmonella enterica subsp. houtenae (subspecies) [taxon 59205], Burkholderia lata (species) [taxon 482957], Mus musculus (house mouse, species) [taxon 10090], Vibrio cholerae (species) [taxon 666], Salmonella enterica (species) [taxon 28901], Salmonella enterica subsp. enterica serovar Typhimurium (no rank) [taxon 90371], Citrobacter (genus) [taxon 544], Salmonella enterica subsp. indica (subspecies) [taxon 59207], Helicobacter pylori (species) [taxon 210], Salmonella enterica subsp. salamae (subspecies) [taxon 59202], Escherichia coli (E. coli, species) [taxon 562], Salmonella enterica subsp. enterica serovar Typhi str. CT18 (strain) [taxon 220341], Klebsiella (genus) [taxon 570], Ralstonia solanacearum (species) [taxon 305], Enterobacteriaceae (enterobacteria, family) [taxon 543], Enterobacter (genus) [taxon 547]
- **Cell lines:** Line 251 — Mus musculus (Mouse), Hybridoma (CVCL_B0L7)

## Full text

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## Figures

5 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12994799/full.md

## References

58 references — full list in the complete paper: https://tomesphere.com/paper/PMC12994799/full.md

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Source: https://tomesphere.com/paper/PMC12994799