# Succinate supplementation ameliorates musculoskeletal defects caused by PLOD3 mutations in a BCARD syndrome model

**Authors:** Dharmendra Choudhary, Gokhan Unlu, Taylor H. Nagai, David B. Melville, Alexandra Scalici, Mais O. Hashem, Dylan J. Ritter, Georg Schmidt, Cory L. Guthrie, Eric R. Gamazon, Fowzan S. Alkuraya, Nancy J. Cox, Ela W. Knapik

PMC · DOI: 10.1186/s13073-026-01608-y · Genome Medicine · 2026-03-13

## TL;DR

Researchers found that adding succinate can help fix musculoskeletal issues caused by PLOD3 gene mutations in a rare connective tissue disorder called BCARD syndrome.

## Contribution

The study identifies succinate as a potential treatment for BCARD syndrome by linking ECM dysfunction to mitochondrial metabolism.

## Key findings

- Succinate treatment ameliorated musculoskeletal defects and restored TCA cycle gene expression in a zebrafish model of BCARD syndrome.
- PLOD3 mutations caused ECM backlog, triggering PERK pathway activation and autophagy, but not fully explaining the phenotypic defects.
- Genetic and metabolic pathways involving PLOD3 and the TCA cycle were linked to mitochondrial structural defects.

## Abstract

BCARD syndrome is a rare complex connective tissue disorder associated with variants in the PLOD3 gene, presenting with musculoskeletal, vascular, and sensory deficits. The role of PLOD3 in post-translational modifications of collagens has been established. However, limited treatment options exist to correct connective tissue deficits linked to PLOD3, largely due to sparse knowledge of cellular and molecular mechanisms driving phenotypic changes.

To explain the mechanisms of PLOD3 genotype-phenotype associations, we have used clinical data, molecular assays in patient-derived fibroblasts, perturbation experiments in zebrafish models, cellular and molecular experiments, and unbiased genome- and transcriptome-wide approaches.

We show that wild-type human PLOD3 mRNA partially rescued musculoskeletal, vascular, and brain phenotypes in zebrafish plod3 mutants, while clinically identified variants had only a limited effect, validating the pathogenicity of the variants and the high conservation of PLOD3 function across vertebrates. We found that, at the molecular level, organ systems selectively upregulated the PERK pathway of the Unfolded Protein Response and subsequently activated autophagy as an adaptive response to an extracellular matrix (ECM) protein backlog; however, autophagy inhibitors did not rescue the plod3 mutant phenotypes. Bulk RNA-seq analysis of plod3 mutants revealed downregulation of genes in metabolic pathways, including the electron transport chain and the tricarboxylic acid (TCA) cycle, consistent with structural defects in electron micrographs of mitochondria. Search of Drug Repurposing Data Portals identified a dietary supplement, succinate, to be associated with PLOD3 and 25 additional genes, involved in the TCA cycle and collagen synthetic pathways. We showed that treatment with succinate ameliorated BCARD features, i.e., musculoskeletal defects, and restored reduced expression of TCA cycle genes in the zebrafish model.

Our data indicate that the interaction between ECM synthesis and mitochondrial energy metabolism offers an entry point for novel therapies to prevent complex connective tissue decline in BCARD and, potentially, in other rare and common musculoskeletal disorders and conditions such as aging, cancer, or injury. Moreover, the genetic models developed here, and succinate, should be valuable tools in future studies of the underlying mechanisms of the BCARD extensive medical phenome.

The online version contains supplementary material available at 10.1186/s13073-026-01608-y.

## Linked entities

- **Genes:** PLOD3 (procollagen-lysine,2-oxoglutarate 5-dioxygenase 3) [NCBI Gene 8985]
- **Chemicals:** succinate (PubChem CID 160419)
- **Species:** Danio rerio (taxon 7955)

## Full-text entities

- **Genes:** atg5 (ATG5 autophagy related 5 homolog (S. cerevisiae)) [NCBI Gene 494180] {aka apg5l, zgc:100934}, vegfaa (vascular endothelial growth factor Aa) [NCBI Gene 30682] {aka vegf, vegfa, wu:fj82c06}, ddit3 (DNA-damage-inducible transcript 3) [NCBI Gene 561924] {aka zgc:162630}, thbs4b (thrombospondin 4b) [NCBI Gene 252850] {aka thbs4, tsp4, zgc:111910}, suclg1 (succinate-CoA ligase GDP/ADP-forming subunit alph) [NCBI Gene 436850] {aka zgc:103729, zgc:92738}, kdr (kinase insert domain receptor (a type III receptor tyrosine kinase)) [NCBI Gene 554230] {aka flk1, flk1b, kdrb, si:busm1-205d10.1, si:ch211-254j6.1, si:ch211-278f21.4}, xbp1 (X-box binding protein 1) [NCBI Gene 140614] {aka cb918, id:ibd1195, treb5, trebf, wu:fb02h05, wu:fb63f10}, plod3 (procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3) [NCBI Gene 556077] {aka cb479, cb816, diwanka, fb72h05, im:6912725, wu:fb72f10}, fosab (Fos proto-oncogene, AP-1 transcription factor subunit b) [NCBI Gene 394198] {aka cb1065, fos, zgc:77885}, fbxo5 (F-box protein 5) [NCBI Gene 445392] {aka emi1, fc65h02, wu:fc65h02, wu:fe06e07, wu:fz79f03, zgc:136397}, gtf2h1 (general transcription factor IIH, polypeptide 1) [NCBI Gene 447857] {aka zgc:92126}, plod1a (procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1a) [NCBI Gene 777635] {aka fc95g08, fi18a05, ik:tdsubs_rzpd609-29b19, plod, plod1, wu:fc29c10}, elf2a (E74-like factor 2a (ets domain transcription factor)) [NCBI Gene 445489] {aka fj65e10, wu:fj65e10, zgc:91894}, suclg2 (succinate-CoA ligase GDP-forming subunit beta) [NCBI Gene 317746] {aka cb625, fd44e06, wu:fd44e06}, sec24d (SEC24 homolog D, COPII coat complex component) [NCBI Gene 553407], ctsba (cathepsin Ba) [NCBI Gene 406645] {aka ctsb, id:ibd1201, wu:fa13g05, wu:fb34e12, zgc:55862, zgc:65809}, atf6 (activating transcription factor 6) [NCBI Gene 558071] {aka fi12h10, si:ch211-199m3.9, si:ch211-260g14.1, wu:fi12h10}, sec24c (SEC24 homolog C, COPII coat complex component) [NCBI Gene 571870] {aka im:7145364, wu:fd10d12}, actb1 (actin, beta 1) [NCBI Gene 57934] {aka ACTB, B-ACTZF, actba, bact, bactin1, bactzf}, PLOD3 (procollagen-lysine,2-oxoglutarate 5-dioxygenase 3) [NCBI Gene 479730], colgalt1a (collagen beta(1-O)galactosyltransferase 1a) [NCBI Gene 565862] {aka colgalt1, glt25d1}, fosaa (Fos proto-oncogene, AP-1 transcription factor subunit a) [NCBI Gene 570238] {aka si:ch1073-403a9.2}, PLOD3 (procollagen-lysine,2-oxoglutarate 5-dioxygenase 3) [NCBI Gene 8985] {aka BCARD, LH3}, pomgnt2 (protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-)) [NCBI Gene 497644] {aka ago61, glyt, gtdc2, im:7153239, zgc:112079}, map1lc3b (microtubule-associated protein 1 light chain 3 beta) [NCBI Gene 322425] {aka Map1lc3, wu:fb60g11, zgc:56434}, eif2ak3 (eukaryotic translation initiation factor 2-alpha kinase 3) [NCBI Gene 559564] {aka PEK, zgc:152949}, lamp1b (lysosomal associated membrane protein 1b) [NCBI Gene 563328] {aka fa56f11, lamp1, si:ch211-218d20.14, wu:fa56f11}, kdrl (kinase insert domain receptor like) [NCBI Gene 796537] {aka flk, flk-1, flk1, kdr, kdra, vegfr-2}, sec23a (Sec23 homolog A, coat complex II component) [NCBI Gene 406774] {aka wu:fc10f08, wu:fi15g03, zgc:55534}, jund (JunD proto-oncogene, AP-1 transcription factor subunit) [NCBI Gene 564873] {aka si:dkey-251j8.3}, atf4b (activating transcription factor 4b) [NCBI Gene 556410] {aka atf4b2, sb:eu681, wu:fb08f07, zgc:171702}, ric1 (RIC1 homolog, RAB6A GEF complex partner 1) [NCBI Gene 100330980] {aka gb:eh610897, rnd}, thbs4a (thrombospondin 4a) [NCBI Gene 563429] {aka zgc:175276}, gabarapa (GABA(A) receptor-associated protein a) [NCBI Gene 326974] {aka gabarap, mg:bb02b03}, sdhc (succinate dehydrogenase complex, subunit C, integral membrane protein) [NCBI Gene 445129] {aka fa91d04, wu:fa91d04, zgc:100898}, col2a1a (collagen, type II, alpha 1a) [NCBI Gene 562496] {aka col2a1, coll2a1, fb38c06, fc10c01, wu:fb38c06, wu:fc10c01}, hspa5 (heat shock protein family A (Hsp70) member 5) [NCBI Gene 378848] {aka cb865, fb60h09, fi36d04, wu:fb60h09, wu:fi36d04, zgc:55994}
- **Diseases:** midfacial hypoplasia (MESH:C537559), Cartilage (MESH:D002357), muscle dysfunction (MESH:D009135), truncal hypotonia (MESH:D009123), CLSD (MESH:C564332), rare diseases (MESH:D035583), Arterial Rupture (MESH:D012421), musculoskeletal deficits (MESH:D009140), aneurysm (MESH:D000783), overdose (MESH:D062787), craniofacial dysmorphology (MESH:D005157), developmental delay (MESH:D002658), connective tissue disorder (MESH:D003240), lens proptosis (MESH:D005094), mitochondrial cytopathies (MESH:C540770), hemorrhage (MESH:D006470), skin blistering (MESH:D001768), intracranial hemorrhage (MESH:D020300), skin abnormalities (MESH:D012868), brain anomalies and dysfunction (MESH:D001927), ECM (MESH:C535509), scoliosis (MESH:D012600), mitochondrial structural defects (MESH:C566527), Bone Abnormalities (MESH:D001847), Deafness (MESH:D003638), Cataracts (MESH:D002386), connective tissue deficiencies (MESH:D009372), cancer (MESH:D009369), craniofacial dysmorphism (MESH:C537512), bone fragility (MESH:C536063), BCARD (MESH:C567320), muscle weakness (MESH:D018908), neural deficits (MESH:D009461), Osteogenesis Imperfecta (MESH:D010013), microcephaly (MESH:D008831), axial skeleton and limb defects (MESH:C537791), pigmentation (MESH:D010859), lens damage (MESH:D007905), heart defects (MESH:D006330), cardiovascular anomalies (MESH:D018376), PLOD3 deficiency (MESH:D007153), neuronal (MESH:D009410), Sensory hearing loss (MESH:D034381), developmental dysmorphology (MESH:C567924), distal arthrogryposis (MESH:C535378), depressed nasal bridge (MESH:D054084), vessel fragility (MESH:D005600), genetic diseases (MESH:D030342), micrognathia (MESH:D008844), CATIFA syndrome (MESH:D013577), cartilage, bone, ocular, ear, and vascular defects (MESH:C563488), stunted semicircular canals (MESH:D006130), musculoskeletal defects (MESH:D009139), contractures (MESH:D003286), vascular anomalies (MESH:D020785)
- **Chemicals:** PVDF (MESH:C024865), 2-oxoglutarate (MESH:D007656), streptomycin (MESH:D013307), Succinate (MESH:D019802), 3-MA (MESH:C025946), ATCC CRL-2522 (-), lysine (MESH:D008239), ENU (MESH:D005038), oil (MESH:D009821), TCA (MESH:D014233), penicillin (MESH:D010406), oxygen (MESH:D010100), methylcellulose (MESH:D008747), H2O2 (MESH:D006861), ethanol (MESH:D000431), DMSO (MESH:D004121), Triton X-100 (MESH:D017830), PBS (MESH:D007854), Amino Acid (MESH:D000596), Chloroform (MESH:D002725), BafA1 (MESH:C040929), Alcian Blue (MESH:D000423), glutaraldehyde (MESH:D005976), MgCl2 (MESH:D015636), SDS (MESH:D012967), 4', 6-Diamidino-2-Phenylindole (MESH:C007293), 1-phenyl-2-thiourea (MESH:D010670), sucrose (MESH:D013395), Chloq (MESH:D002738), poly T (MESH:D011071), PFA (MESH:C003043), L-ascorbic acid (MESH:D001205), LysoTracker (MESH:C493330), tween (MESH:D011136), KOH (MESH:C029943), CO2 (MESH:D002245), glycine (MESH:D005998), isopropanol (MESH:D019840), water (MESH:D014867), Alizarin (MESH:C010078), glycerol (MESH:D005990), BCA (MESH:C047117), MS-222 (MESH:C003636), TRIzol (MESH:C411644), proline (MESH:D011392), Lipids (MESH:D008055), glycans (MESH:D011134)
- **Species:** Danio rerio (leopard danio, species) [taxon 7955], Moloney murine leukemia virus (no rank) [taxon 11801], Homo sapiens (human, species) [taxon 9606], Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932]
- **Mutations:** c.1353 C > T, p.Arg452_Val453, p.Arg452*, p.Cys691Ala fs*9, L627P, 1354 C, G > A transition at base pair 843, Arg452_Val453del, Arg452, G245E, G256, Leu627
- **Cell lines:** BJ fibroblasts — Homo sapiens (Human), Telomerase immortalized cell line (CVCL_6573), fibroblasts — Mus musculus (Mouse), Spontaneously immortalized cell line (CVCL_0594), MF20 — Homo sapiens (Human), Finite cell line (CVCL_DI54), 293T — Homo sapiens (Human), Transformed cell line (CVCL_0063)

## Full text

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## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12994257/full.md

## References

3 references — full list in the complete paper: https://tomesphere.com/paper/PMC12994257/full.md

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Source: https://tomesphere.com/paper/PMC12994257