# TDP-43 impairs glycolysis by sequestering hexokinase 1 in amyotrophic lateral sclerosis

**Authors:** Cassandra Barone, Rihua Wang, Sarah Cooke, Hang Pong Ng, Rodolfo S. Ferreira, Helen C. Miranda, Xin Qi

PMC · DOI: 10.1007/s00401-026-02996-6 · Acta Neuropathologica · 2026-03-16

## TL;DR

This paper shows that TDP-43 in ALS disrupts glycolysis by trapping HK1, causing energy problems in neurons and suggesting glycolytic restoration as a treatment.

## Contribution

The study reveals a novel mechanism where TDP-43 impairs glycolysis by sequestering HK1, linking metabolic dysfunction to ALS pathology.

## Key findings

- Cytoplasmic TDP-43 reduces glycolytic capacity in patient-derived neurons by binding and sequestering HK1.
- Compensating for HK1 loss improves motor performance and survival in TDP-43-associated ALS models.
- TDP-43 mislocalization decreases HK1 mitochondrial association and enzymatic activity in multiple ALS models.

## Abstract

Amyotrophic lateral sclerosis (ALS) is a fatal neurodegenerative disorder characterized by progressive motor neuron degeneration and cytoplasmic mislocalization of TDP-43. While metabolic dysfunction is increasingly recognized in ALS, the mechanistic link between impaired energy metabolism and TDP-43 pathology remains unknown. Here, we show that cytoplasmic TDP-43 directly disrupts glycolysis by targeting hexokinase 1 (HK1), the first rate-limiting enzyme of the pathway. In cells expressing a TDP-43 variant lacking its nuclear localization signal and in patient-derived iPSC motor neurons, TDP-43 accumulation in the cytoplasm reduces glycolytic capacity, indicating a neuron-intrinsic metabolic defect. Across cellular models including patient-derived neurons, TDP-43 mutant mice, and postmortem spinal cord tissue from ALS patients, we observe consistent decreases in HK1 protein level, mitochondrial association, and enzymatic activity, despite unchanged transcript levels. Mechanistically, cytoplasmic TDP-43 directly binds to HK1, disassociating it from mitochondria and promoting its sequestration into insoluble aggregates. This mislocalization impairs glycolysis and increases neuronal vulnerability. Notably, compensation for HK1 loss reduces cytoplasmic TDP-43 and ubiquitin accumulation, improves motor performance, and prolongs survival in TDP-43–associated ALS models. Together, these findings identify a previously unrecognized mechanism by which TDP-43 impairs glycolysis through HK1 misregulation and highlight glycolytic restoration as a potential therapeutic strategy in ALS.

The online version contains supplementary material available at 10.1007/s00401-026-02996-6.

## Linked entities

- **Genes:** TARDBP (TAR DNA binding protein) [NCBI Gene 23435], HK1 (hexokinase 1) [NCBI Gene 3098]
- **Proteins:** TARDBP (TAR DNA binding protein), HK1 (hexokinase 1), HK1 (hexokinase 1)
- **Diseases:** amyotrophic lateral sclerosis (MONDO:0004976), ALS (MONDO:0004976)

## Full-text entities

- **Genes:** TARDBP (TAR DNA binding protein) [NCBI Gene 23435] {aka ALS10, TDP-43}, ENO1 (enolase 1) [NCBI Gene 2023] {aka ENO1-IT1, ENO1L1, HEL-S-17, MPB1, NNE, PPH}, RBFOX3 (RNA binding fox-1 homolog 3) [NCBI Gene 146713] {aka FOX-3, FOX3, HRNBP3, NEUN}, PKM (pyruvate kinase M1/2) [NCBI Gene 5315] {aka CTHBP, HEL-S-30, OIP3, PK3, PKM2, TCB}, Shh (sonic hedgehog) [NCBI Gene 20423] {aka 9530036O11Rik, Dsh, HHG-1, Hhg1, Hx, Hxl3}, HK1 (hexokinase 1) [NCBI Gene 3098] {aka CNSHA5, HK, HK1-ta, HK1-tb, HK1-tc, HKD}, PGAM1 (phosphoglycerate mutase 1) [NCBI Gene 5223] {aka HEL-S-35, PGAM-B, PGAMA}, ALDOA (aldolase, fructose-bisphosphate A) [NCBI Gene 226] {aka ALDA, GSD12, HEL-S-87p}, RPL13 (ribosomal protein L13) [NCBI Gene 6137] {aka BBC1, D16S444E, D16S44E, L13, SEMDIST, eL13}, LDHA (lactate dehydrogenase A) [NCBI Gene 3939] {aka GSD11, HEL-S-133P, LDHM, PIG19}, PGK1 (phosphoglycerate kinase 1) [NCBI Gene 5230] {aka HEL-S-68p, MIG10, PGKA}, Tardbp (TAR DNA binding protein) [NCBI Gene 230908] {aka 1190002A23Rik, TDP-43, Tdp43}, GPLD1 (glycosylphosphatidylinositol specific phospholipase D1) [NCBI Gene 2822] {aka GPIPLD, GPIPLDM, PIGPLD, PIGPLD1, PLD}, Rbfox3 (RNA binding protein, fox-1 homolog (C. elegans) 3) [NCBI Gene 52897] {aka Fox-3, Hrnbp3, NeuN, Neuna60}, Cntf (ciliary neurotrophic factor) [NCBI Gene 12803], SYN1 (synapsin I) [NCBI Gene 6853] {aka EPILX, EPILX1, MRX50, SYN1a, SYN1b, SYNI}, GPI (glucose-6-phosphate isomerase) [NCBI Gene 2821] {aka AMF, CNSHA4, GNPI, NLK, PGI, PHI}, Gdnf (glial cell line derived neurotrophic factor) [NCBI Gene 14573] {aka ATF}, CHAT (choline O-acetyltransferase) [NCBI Gene 1103] {aka CHOACTASE, CMS1A, CMS1A2, CMS6}, Tomm20 (translocase of outer mitochondrial membrane 20) [NCBI Gene 67952] {aka 1810060K07Rik, Gm19268, MAS20, MOM19, TOM20, mKIAA0016}, Pkm (pyruvate kinase, muscle) [NCBI Gene 18746] {aka Pk-2, Pk-3, Pk3, Pkm2}, GAPDH (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 2597] {aka G3PD, GAPD, HEL-S-162eP}, Hk1 (hexokinase 1) [NCBI Gene 15275] {aka Hk-1, Hk1-s, dea, mHk1-s}, Bdnf (brain derived neurotrophic factor) [NCBI Gene 12064], TPI1 (triosephosphate isomerase 1) [NCBI Gene 7167] {aka HEL-S-49, TIM, TPI, TPID}, Chat (choline O-acetyltransferase) [NCBI Gene 12647] {aka B230380D24Rik, CHOACTase}, Atp1b1 (ATPase, Na+/K+ transporting, beta 1 polypeptide) [NCBI Gene 11931] {aka Atp4b, Atpb, Atpb-1, NKbeta1}, SOD1 (superoxide dismutase 1) [NCBI Gene 6647] {aka ALS, ALS1, HEL-S-44, IPOA, SOD, STAHP}, PFKM (phosphofructokinase, muscle) [NCBI Gene 5213] {aka ATP-PFK, GSD7, PFK-1, PFK-A, PFK1, PFKA}
- **Diseases:** mitochondrial dysfunction (MESH:D028361), ALS (MESH:D000690), MN degeneration (MESH:D009410), respiratory failure (MESH:D012131), neurodegeneration (MESH:D019636), mitochondrial defects (MESH:C565376), toxicity (MESH:D064420), HCM (MESH:D000092183), muscle weakness (MESH:D018908), pain (MESH:D010146), AD (MESH:D000544), OMM (MESH:D015433), proteinopathy (MESH:D057165), LCD (MESH:D009800), paralysis (MESH:D010243), death (MESH:D003643), TDP-43G298S (MESH:D016171), metabolic dysfunction (MESH:D008659), glycolytic impairment (MESH:D060825)
- **Chemicals:** MTT (MESH:C070243), CO (MESH:D002248), G418 (MESH:C010680), antimycin A (MESH:D000968), water (MESH:D014867), TRIzol (MESH:C411644), EDTA (MESH:D004492), xylene (MESH:D014992), HEPES (MESH:D006531), Co (MESH:D003035), NaCl (MESH:D012965), puromycin (MESH:D011691), RA (MESH:D014212), terazosin (MESH:C041226), urea (MESH:D014508), N2 (MESH:D009584), glucose (MESH:D005947), rotenone (MESH:D012402), oligomycin (MESH:D009840), NaOH (MESH:D012972), SDS (MESH:D012967), MgCl2 (MESH:D015636), DAPI (MESH:C007293), AP (MESH:D000667), glucose-6-phosphate (MESH:D019298), Sucrose (MESH:D013395), HCl (MESH:D006851), sodium citrate (MESH:D000077559), paraformaldehyde (MESH:C003043), ATP (MESH:D000255), MG-132 (MESH:C072553), Hematoxylin (MESH:D006416), ascorbic acid (MESH:D001205), CO2 (MESH:D002245), Tween-20 (MESH:D011136), OCT (MESH:C051883), acetone (MESH:D000096), 18F-FDG (MESH:D019788), methanol (MESH:D000432), thiourea (MESH:D013890), H2O2 (MESH:D006861), penicillin (MESH:D010406), oxygen (MESH:D010100), Triton X-100 (MESH:D017830), ethanol (MESH:D000431), Poly-l-Ornithine (MESH:C008973), CHAPS (MESH:C028213), PBS (MESH:D007854), 3,3'-Diaminobenzidine (MESH:D015100), SB 431542 (MESH:C459179), Carbonyl cyanide-4 (trifluoromethoxy) phenylhydrazone (MESH:C108897), KCl (MESH:D011189), EGTA (MESH:D004533), streptomycin (MESH:D013307), 2-DG (MESH:D003847), sodium deoxycholate (MESH:D003840), CHIR 99021 (MESH:C473711), GC (MESH:C057580), Luminol (MESH:D008165), Coumaric acid (MESH:D003373)
- **Species:** Drosophila melanogaster (fruit fly, species) [taxon 7227], Homo sapiens (human, species) [taxon 9606], Danio rerio (leopard danio, species) [taxon 7955], Mus musculus (house mouse, species) [taxon 10090]
- **Mutations:** A/G, -43G298S, G376D, G93A, A315T
- **Cell lines:** HEK293 — Homo sapiens (Human), Transformed cell line (CVCL_0045), KOLF2.1 J — Homo sapiens (Human), Induced pluripotent stem cell (CVCL_B5P3), NSC-34 — Mus musculus (Mouse), Hybrid cell line (CVCL_D356), C57BL/6J — Mus musculus (Mouse), Transformed cell line (CVCL_C0MW), C103A3 — Homo sapiens (Human), Induced pluripotent stem cell (CVCL_VD03), TDP-43A315T — Homo sapiens (Human), Chronic myelogenous leukemia, BCR-ABL1 positive, Cancer cell line (CVCL_TR85)

## Full text

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## Figures

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Source: https://tomesphere.com/paper/PMC12992470