# Paneth cells as orchestrators of epithelial barrier defense and emerging therapeutic targets in inflammatory bowel disease

**Authors:** Lena Erkert, Lea-Maxie Haag, Christoph Becker

PMC · DOI: 10.1007/s00281-026-01068-x · Seminars in Immunopathology · 2026-03-16

## TL;DR

Paneth cells are crucial for gut defense and maintaining the intestinal barrier, and their dysfunction is linked to inflammatory bowel disease, offering new therapeutic opportunities.

## Contribution

This review highlights the role of Paneth cells in gut health and IBD pathogenesis, emphasizing novel therapeutic strategies targeting these cells.

## Key findings

- Paneth cells maintain antimicrobial defense and stem cell niches in the gut.
- Dysfunction of Paneth cells is closely linked to microbial dysbiosis and IBD development.
- Emerging therapies aim to restore Paneth cell homeostasis to treat IBD.

## Abstract

First described by Joseph Paneth in 1888 in the small intestine, particularly in the crypts of Lieberkühn, Paneth cells have since emerged as a critical subtype of intestinal epithelial cells (IECs), which together constitute the body’s largest interface with the external environment, continuously exposed to pathogens, dietary components, and toxins. Paneth cells represent a unique, long-lived secretory IEC population located at the crypt base, where they play indispensable roles in antimicrobial defense and stem cell niche maintenance. Their differentiation, positioning, and survival are governed by tightly regulated signaling networks, including the Wnt and Notch pathway. Although traditionally viewed as terminally differentiated, emerging evidence suggests Paneth cells possess a certain level of plasticity, enabling functional adaptation or dedifferentiation under stress or injury. These characteristics position Paneth cells as central regulators of intestinal homeostasis and epithelial barrier integrity. Over the last decades, accumulating evidence has established that Paneth cell dysfunction is closely linked to microbial dysbiosis and the development of inflammatory bowel disease (IBD), highlighting their contribution to disease pathogenesis. Recent discoveries on how Paneth cell dysfunction contributes to intestinal inflammation are uncovering new therapeutic approaches aimed at reestablishing Paneth cell homeostasis and alleviating IBD progression. In this review, we comprehensively summarize current knowledge on Paneth cell differentiation, function, and their role in gut host defense and epithelial barrier maintenance. We further discuss mechanisms by which Paneth cell dysfunction disrupts intestinal homeostasis, promoting IBD development, and highlight emerging therapeutic strategies that target Paneth cells to reestablish barrier integrity and restore gut health.

## Linked entities

- **Diseases:** inflammatory bowel disease (MONDO:0005265), IBD (MONDO:0005265)

## Full-text entities

- **Genes:** Kitl (kit ligand) [NCBI Gene 17311] {aka Clo, Con, Gb, Kitlg, Mgf, SCF}, Mlkl (mixed lineage kinase domain-like) [NCBI Gene 74568] {aka 9130019I15Rik}, Kit (Kit proto-oncogene receptor tyrosine kinase) [NCBI Gene 16590] {aka Bs, CD117, Fdc, Gsfsco1, Gsfsco5, Gsfsow3}, Hes5 (hes family bHLH transcription factor 5) [NCBI Gene 15208] {aka bHLHb38}, Lrrk2 (leucine-rich repeat kinase 2) [NCBI Gene 66725] {aka 4921513O20Rik, 9330188B09Rik, D630001M17Rik, Gm927, cI-46}, Pla2g2a (phospholipase A2, group IIA (platelets, synovial fluid)) [NCBI Gene 18780] {aka EF, Mom1, Pla2, sPLA2, sPla2-IIA}, Dll1 (delta like canonical Notch ligand 1) [NCBI Gene 13388] {aka Delta1}, Il4 (interleukin 4) [NCBI Gene 16189] {aka BSF-1, Il-4}, DEFA6 (defensin alpha 6) [NCBI Gene 1671] {aka DEF6, HD-6}, Ocln (occludin) [NCBI Gene 18260] {aka Ocl}, Casp1 (caspase 1) [NCBI Gene 12362] {aka ICE, Il1bc}, Nod2 (nucleotide-binding oligomerization domain containing 2) [NCBI Gene 257632] {aka ACUG, BLAU, CD, Card15, F830032C23Rik, IBD1}, Api5 (apoptosis inhibitor 5) [NCBI Gene 11800] {aka AAC-11, API-5}, LRP6 (LDL receptor related protein 6) [NCBI Gene 4040] {aka ADCAD2, EVR8, OPTA4, STHAG7}, TCF4 (transcription factor 4) [NCBI Gene 6925] {aka CDG2T, E2-2, FCD2, FECD3, ITF-2, ITF2}, AHR (aryl hydrocarbon receptor) [NCBI Gene 196] {aka FVH3, RP85, bHLHe76}, Wnt3 (wingless-type MMTV integration site family, member 3) [NCBI Gene 22415] {aka Int-4, Wnt-3}, Defa2 (defensin, alpha, 2) [NCBI Gene 100294660] {aka CR2, Defcr-2, Defcr2}, Tgfb1 (transforming growth factor, beta 1) [NCBI Gene 21803] {aka TGF-beta1, TGFbeta1, Tgfb, Tgfb-1}, Defa5 (defensin, alpha, 5) [NCBI Gene 13239] {aka Defa29, Defcr29, Defcr5}, Tgfa (transforming growth factor alpha) [NCBI Gene 21802] {aka wa-1, wa1}, Lyz1 (lysozyme 1) [NCBI Gene 17110] {aka Lyz, Lyzf3, Lzp-s}, Muc1 (mucin 1, transmembrane) [NCBI Gene 17829] {aka CD227, EMA, Muc-1}, Tjp1 (tight junction protein 1) [NCBI Gene 21872] {aka ZO1}, Tlr5 (toll-like receptor 5) [NCBI Gene 53791], Notch1 (notch 1) [NCBI Gene 18128] {aka 9930111A19Rik, Mis6, N1, Tan1, lin-12}, Defa4 (defensin, alpha, 4) [NCBI Gene 13238] {aka Crp4, Defa28, Defcr4}, Atg12 (autophagy related 12) [NCBI Gene 67526] {aka 4931423H11Rik, A330058M13Rik, Apg12l, Atg12l}, Akt1 (Akt serine/threonine kinase 1) [NCBI Gene 11651] {aka Akt, LTR-akt, PKB, PKB/Akt, PKBalpha, Rac}, Tnf (tumor necrosis factor) [NCBI Gene 21926] {aka DIF, TNF-a, TNF-alpha, TNFSF2, TNFalpha, Tnfa}, Notum (notum palmitoleoyl-protein carboxylesterase) [NCBI Gene 77583] {aka 5730593N15Rik}, Adam10 (a disintegrin and metallopeptidase domain 10) [NCBI Gene 11487] {aka 1700031C13Rik, MADM, kuz, kuzbanian}, Il13 (interleukin 13) [NCBI Gene 16163] {aka Il-13}, Wnt3a (wingless-type MMTV integration site family, member 3A) [NCBI Gene 22416] {aka Wnt-3a, vt}, Ifna (interferon alpha complex region) [NCBI Gene 111654] {aka Ifa, Ifa8}, Ctnnb1 (catenin beta 1) [NCBI Gene 12387] {aka Bfc, Catnb, Mesc}, REG3A (regenerating family member 3 alpha) [NCBI Gene 5068] {aka HIP, HIP/PAP, INGAP, PAP, PAP-H, PAP1}, Nr4a1 (nuclear receptor subfamily 4, group A, member 1) [NCBI Gene 15370] {aka GFRP1, Gfrp, Hbr-1, Hbr1, Hmr, N10}, Ephb3 (Eph receptor B3) [NCBI Gene 13845] {aka Cek10, Etk2, HEK2, MDK5, Sek4, Tyro6}, Lyz2 (lysozyme 2) [NCBI Gene 17105] {aka Lys, Lysm, Lyzf2, Lyzs, Lzm, Lzm-s1}, Dll4 (delta like canonical Notch ligand 4) [NCBI Gene 54485] {aka Delta4}, Tlr9 (toll-like receptor 9) [NCBI Gene 81897], Defa1 (defensin, alpha 1) [NCBI Gene 13216] {aka Defcr, Defcr1}, Wnt11 (wingless-type MMTV integration site family, member 11) [NCBI Gene 22411], Pparg (peroxisome proliferator activated receptor gamma) [NCBI Gene 19016] {aka Nr1c3, PPAR-gamma, PPAR-gamma2, PPARgamma, PPARgamma2}, Notch2 (notch 2) [NCBI Gene 18129] {aka N2}, Il1b (interleukin 1 beta) [NCBI Gene 16176] {aka IL-1beta, Il-1b}, Hdac5 (histone deacetylase 5) [NCBI Gene 15184] {aka HD5, Hdac4, mHDA1, mKIAA0600}, Myd88 (myeloid differentiation primary response gene 88) [NCBI Gene 17874], Itgax (integrin alpha X) [NCBI Gene 16411] {aka Cd11c, Cr4, N418}, Apc (APC, WNT signaling pathway regulator) [NCBI Gene 11789] {aka CC1, Min, mAPC}, Defb2 (defensin beta 2) [NCBI Gene 13215] {aka BD-2}, Sox9 (SRY (sex determining region Y)-box 9) [NCBI Gene 20682] {aka 2010306G03Rik, mKIAA4243, mSox9}, Muc6 (mucin 6, gastric) [NCBI Gene 353328], Nlrp3 (NLR family, pyrin domain containing 3) [NCBI Gene 216799] {aka AGTAVPRL, AII/AVP, Cias1, FCAS, FCU, MWS}, Ticam2 (TIR domain containing adaptor molecule 2) [NCBI Gene 225471] {aka B430113A10, TICAM-2, TRAM, Tirp, Trif}, Tlr4 (toll-like receptor 4) [NCBI Gene 21898] {aka Lps, Ly87, Ran/M1, Rasl2-8}, Egf (epidermal growth factor) [NCBI Gene 13645], Mmp7 (matrix metallopeptidase 7) [NCBI Gene 17393] {aka MAT, MMP-7}, Muc13 (mucin 13, epithelial transmembrane) [NCBI Gene 17063] {aka 114/A10, 14/A10, Lrrp, Ly64, NJ-1}
- **Diseases:** epithelial injury (MESH:D009375), IBD (MESH:D015212), ileal CD (MESH:D007077), infection (MESH:D007239), intestinal damage (MESH:D007410), sepsis (MESH:D018805), dysfunction (MESH:D006331), granulomatous lesions (MESH:D006105), CD (MESH:D003424), obese (MESH:D009765), UC (MESH:D003093), bacterial (MESH:D001424), dysbiosis (MESH:D064806), toxicity (MESH:D064420), colitis (MESH:D003092), enteric infection (MESH:D004751), Helicobacter hepaticus infection (MESH:D016481), Paneth cell abnormalities (MESH:D002292), Paneth cell hyperplasia (MESH:D006965), mitochondrial (MESH:D028361), ileitis (MESH:D007079), Salmonella typhimurium infection (MESH:D012480), chronic inflammation (MESH:D007249)
- **Chemicals:** infliximab (MESH:D000069285), vedolizumab (MESH:C543529), TNBS (MESH:D014302), reactive oxygen species (MESH:D017382), luminal (MESH:D010634), BTP (-), Csn-B (MESH:C531461), phosphatidylglycerol (MESH:D010715), Brilacidin (MESH:C000611530), 4-phenylbutyrate (MESH:C075773), oxygen (MESH:D010100), ustekinumab (MESH:D000069549), methotrexate (MESH:D008727), lactate (MESH:D019344), certolizumab (MESH:D000068582), Mito-Tempo (MESH:C555916), rosiglitazone (MESH:D000077154), amino acids (MESH:D000596), bile acid (MESH:D001647), tofacitinib (MESH:C479163), phosphatidylethanolamine (MESH:C483858), eicosanoids (MESH:D015777), carbohydrate (MESH:D002241), LPS (MESH:D008070), sugars (MESH:D000073893), Zinc (MESH:D015032), azathioprine (MESH:D001379), AMP (MESH:D000089882), SCFAs (MESH:D005232), MDP (MESH:D000119), propionate (MESH:D011422), polyinosinic: polycytidylic acid (MESH:D011070), doxorubicin (MESH:D004317), adalimumab (MESH:D000068879), acetate (MESH:D000085), polysaccharide (MESH:D011134), dichloroacetate (MESH:D003999), prednisolone (MESH:D011239), lipid (MESH:D008055), glucose (MESH:D005947), Nec-1 (MESH:C507699), carbamylcholine (MESH:D002217), filgotinib (MESH:C584571), CpG-oligodeoxynucleotides (MESH:C408982), butyrate (MESH:D002087)
- **Species:** Bos taurus (bovine, species) [taxon 9913], Trichinella spiralis (species) [taxon 6334], Bacillota (clostridial firmicutes, phylum) [taxon 1239], Mus musculus (house mouse, species) [taxon 10090], Bacteria Latreille et al. 1825 (Bacteria stick insect, genus) [taxon 629395], Rattus norvegicus (brown rat, species) [taxon 10116], Lactococcus lactis (species) [taxon 1358], Helicobacter hepaticus (species) [taxon 32025], Gallus gallus (bantam, species) [taxon 9031], Sus scrofa (pig, species) [taxon 9823], Homo sapiens (human, species) [taxon 9606], Nicotiana tabacum (American tobacco, species) [taxon 4097], Sutterella (genus) [taxon 40544], Akkermansia (genus) [taxon 239934], Salmonella enterica subsp. enterica serovar Typhimurium (no rank) [taxon 90371], Ovis aries (domestic sheep, species) [taxon 9940], Allobaculum (genus) [taxon 174708]
- **Mutations:** T300A, N2081D, rs10210302, G2019S
- **Cell lines:** PC — Homo sapiens (Human), Pancreatic carcinoma, Cancer cell line (CVCL_UU13)

## Full text

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## References

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Source: https://tomesphere.com/paper/PMC12992469