# Neurotrophic Modulation Restores Motor and Developmental Defects in Zebrafish Models of ints11 Deficiency

**Authors:** Anna Pistocchi, Elena Chiricozzi, Matilde Molteni, Gaia Galassi, Laura Mauri, Francesca Balistreri, Stefania Magri, Anna Marozzi, Franco Taroni, Alex Pezzotta

PMC · DOI: 10.1111/jnc.70408 · Journal of Neurochemistry · 2026-03-16

## TL;DR

This study uses zebrafish to model INTS11 deficiency and shows that neurotrophic treatments can restore motor and developmental defects linked to this genetic disorder.

## Contribution

The first in vivo zebrafish model of INTS11-associated neurodevelopmental dysfunction is established, revealing conserved mechanisms and potential therapeutic strategies.

## Key findings

- ints11 deficiency in zebrafish causes motor and behavioral deficits similar to human patients.
- Pharmacological treatments like BDNF and OligoGM1 rescue the observed neurodevelopmental defects.
- ints11 loss leads to dysregulated gene expression affecting neuronal and glial maturation.

## Abstract

Mutations in INTS11, the catalytic subunit of the Integrator complex essential for RNA processing and transcriptional termination, have been linked to neurodevelopmental disorders (NDDs), yet the underlying mechanisms remain poorly understood. To address this gap, we developed and characterized a novel ints11 loss‐of‐function zebrafish model using CRISPR/Cas9 and morpholino‐based approaches, which recapitulates key phenotypic traits observed in human patients, including motor and behavioral deficits. ints11 deficiency led to marked impairments in locomotor activity and visual motor response, consistent with the neurological manifestations reported in INTS11‐mutated patients. These behavioral abnormalities were paralleled by significant dysregulation of neurodevelopmental gene expression, including decreased expression of islet1, map2, gfap, and mag, and upregulation of the progenitor marker nestin, indicating defective neuronal differentiation and glial maturation. Interestingly, the observed phenotypes are rescued not only by mRNA‐mediated re‐expression of ints11, but also through pharmacological administration with brain‐derived neurotrophic factor (BDNF) and the GM1 ganglioside‐derived oligosaccharide (OligoGM1). These findings highlight neurotrophic signaling as a potential compensatory axis counteracting RNA‐processing defects. In conclusion, our work establishes the first in vivo zebrafish model of INTS11‐associated neurodevelopmental dysfunction, uncovering conserved molecular mechanisms that link Integrator complex activity, neurotrophic support, and neuronal maturation and providing a valuable platform for dissecting disease mechanisms and evaluating therapeutic strategies targeting RNA processing pathways and neurotrophic support in NDDs.

The study investigates the functional consequences of INTS11 loss‐of‐function (LoF), a genetic alteration linked to neurodevelopmental disorder (NDD), using zebrafish as an in vivo model. To model ints11 deficiency, two complementary approaches are applied: morpholino‐mediated knock‐down and CRISPR–Cas9 transient knock‐out, establishing ints11‐LoF conditions for phenotypic analysis. Behavioral assays reveal abnormal sensorimotor responses to visual and tactile stimuli, consistent with impaired nervous system function. At the cellular level, ints11 disruption leads to altered neural differentiation, with an expansion of neural precursor populations and a reduction of glial lineages, including oligodendrocytes and astrocytes. Injection of ints11 mRNA rescues the observed defects, demonstrating that the phenotype is specifically driven by ints11 loss‐of‐function rather than off‐target or procedural effects. Moreover, the improvement following pharmacological treatment (e.g., BDNF and OligoGM1) indicates that ints11‐dependent neurodevelopmental alterations can be at least partially mitigated pharmacologically, supporting the feasibility of therapeutic intervention for INTS11‐associated pathology. Overall, the findings support a key role for ints11 in regulating neurodevelopmental and indicate that ints11‐LoF in zebrafish recapitulates NDD‐relevant mutated‐patients phenotypes.

## Linked entities

- **Genes:** INTS11 (integrator complex subunit 11) [NCBI Gene 54973], ISL1 (ISL LIM homeobox 1) [NCBI Gene 3670], MAP2 (microtubule associated protein 2) [NCBI Gene 4133], GFAP (glial fibrillary acidic protein) [NCBI Gene 2670], MAG (myelin associated glycoprotein) [NCBI Gene 4099], nes.L (nestin L homeolog) [NCBI Gene 108699393]
- **Species:** Danio rerio (taxon 7955)

## Full-text entities

- **Genes:** ints4 (integrator complex subunit 4) [NCBI Gene 564681] {aka si:ch73-39g20.4}, map2 (microtubule-associated protein 2) [NCBI Gene 450004] {aka zgc:103474, zgc:113974}, BDNF (brain derived neurotrophic factor) [NCBI Gene 627] {aka ANON2, BULN2}, egr2a (early growth response 2a) [NCBI Gene 368241] {aka frb35}, sox10 (SRY-box transcription factor 10) [NCBI Gene 140616] {aka cls/sox10, zgc:100757}, hbae3 (hemoglobin alpha embryonic-3) [NCBI Gene 30601] {aka fb57a06, globin, si:by119c3.4, si:ch211-5k11.15, wu:fb57a06, zgc:86867}, GFAP (glial fibrillary acidic protein) [NCBI Gene 2670] {aka ALXDRD}, ints1 (integrator complex subunit 1) [NCBI Gene 562131] {aka fa14a05, wu:fa14a05, wu:fa55a06}, gfap (glial fibrillary acidic protein) [NCBI Gene 30646] {aka cb345, etID36982.3, gfapl, wu:fb34h11, wu:fk42c12, xx:af506734}, pax2a (paired box 2a) [NCBI Gene 30425] {aka PAXZF-B, Pax-2, cb378, noi, pax-b, pax2.1}, ints9 (integrator complex subunit 9) [NCBI Gene 768124] {aka im:7144223, zgc:154012}, bdnf (brain-derived neurotrophic factor) [NCBI Gene 58118], mag (myelin associated glycoprotein) [NCBI Gene 474346] {aka siglec-4}, gata1a (GATA binding protein 1a) [NCBI Gene 30481] {aka gata1, gta1, sb:eu551, vlt, zg1}, ints11 (integrator complex subunit 11) [NCBI Gene 553648] {aka cpsf3l, zgc:110671}, Cas9 [NCBI Gene 46806597], MAP2 (microtubule associated protein 2) [NCBI Gene 4133] {aka MAP-2, MAP2A, MAP2B, MAP2C}, runx1 (RUNX family transcription factor 1) [NCBI Gene 58126] {aka runxa}, rpl8 (ribosomal protein L8) [NCBI Gene 393686] {aka zgc:73105, zgc:77641}, isl1a (ISL LIM homeobox 1a) [NCBI Gene 30147] {aka Isl-1, isl1, islet-1}, ISL1 (ISL LIM homeobox 1) [NCBI Gene 3670] {aka ISLET1, Isl-1}, INTS11 (integrator complex subunit 11) [NCBI Gene 54973] {aka CPSF3L, CPSF73L, INT11, NEDMLOB, PSF3L, RC-68}, MAG (myelin associated glycoprotein) [NCBI Gene 4099] {aka GMA, S-MAG, SIGLEC-4A, SIGLEC4, SIGLEC4A, SPG75}, mbl2 (mannose binding lectin 2) [NCBI Gene 100008009] {aka etID42583.2, fb68b07, hbl3, mbl, wu:fb68b07, zgc:109836}, brat1 (BRCA1-associated ATM activator 1) [NCBI Gene 678547] {aka baat1, zgc:136845}
- **Diseases:** growth restriction (MESH:D005317), neurodevelopmental defects (MESH:D065886), pigmentation (MESH:D010859), Motor (MESH:D000068079), embryonic lethality (MESH:D020964), and morphological abnormalities (MESH:D000013), cerebellar atrophy (MESH:D002526), cardiac edema (MESH:D004489), brain atrophy (MESH:C566985), behavioral deficits (MESH:D019958), intellectual disability (MESH:D008607), cognitive and motor impairment (MESH:D003072), Neurotrophic (MESH:D009133), behavioral abnormalities (MESH:D001523), microcephaly (MESH:D008831), developmental and language delay (MESH:D007805), Motor and Developmental Defects (MESH:D000094602), neurodevelopmental alterations (MESH:C535809), NDDs (MESH:D002658), atrophy (MESH:D001284), lethality (MESH:C536057)
- **Chemicals:** oligosaccharide (MESH:D009844), formamide (MESH:C031066), water (MESH:D014867), melatonin (MESH:D008550), GM1 ganglioside (MESH:D005677), Methylene Blue (MESH:D008751), PBS (MESH:D007854), 1-phenyl-2-thiourea (MESH:D010670), EDTA (MESH:D004492), tricaine (MESH:C003636), OligoGM1 (MESH:C030332), Tris (-), agarose (MESH:D012685)
- **Species:** Homo sapiens (human, species) [taxon 9606], Felis catus (cat, species) [taxon 9685], Danio rerio (leopard danio, species) [taxon 7955]
- **Mutations:** P301L, E3321S

## Full text

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## Figures

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## References

50 references — full list in the complete paper: https://tomesphere.com/paper/PMC12990292/full.md

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Source: https://tomesphere.com/paper/PMC12990292