# Antiviral Profiling and Cellular Activation of Carbobicyclic Nucleoside Analogues

**Authors:** Stephan Scheeff, Joan Marie Javillo Baguio, Benny Zhibin Liang, Josefina Xeque Amada, Kin Pong Tao, Steven De Jonghe, Leentje Persoons, Tiffany Hoi-Yee Chow, Carmen Ka Man Tse, Roy Yukang Wu, Xinzhou Xu, Zhong Zuo, Peter Pak-Hang Cheung, Renee Wan Yi Chan, Billy Wai-Lung Ng

PMC · DOI: 10.1021/acs.jmedchem.5c02584 · Journal of Medicinal Chemistry · 2026-02-20

## TL;DR

This paper introduces a new class of nucleoside analogues with broad antiviral activity and reduced toxicity.

## Contribution

A new carbobicyclic scaffold is proposed as a promising chemotype for nucleoside-based antiviral drugs.

## Key findings

- The carbobicyclic scaffold showed pan-antiviral activity against HCV, HSV, and influenza.
- The uracil analogue 2a inhibits influenza A virus replication by targeting the viral polymerase.
- Triphosphate metabolites from the scaffold do not interact with human DNA/RNA polymerases, reducing toxicity.

## Abstract

Nucleoside analogues are important antiviral and anticancer
agents.
In this study, we investigated a new class of nucleoside analogues
built on a synthetically accessible carbobicyclic scaffold designed
as a conformational mimic of ribose. Antiviral screening of our library
revealed pan-antiviral activity against a range of viruses, including
HCV, HSV, and influenza. Structure–activity relationship (SAR)
studies highlighted the critical role of the carbocyclic scaffold.
The uracil analogue 2a inhibited influenza A virus replication
through direct disruption of the viral polymerase, as confirmed by
a minigenome assay and further supported by in silico modeling. Importantly, metabolism studies demonstrated that congested
C5′–OH is readily phosphorylated without the need for
prodrug formulations. The resulting triphosphate metabolites are not
substrates of human DNA/RNA polymerases, a primary mechanism of nucleoside
drug toxicity. Supported by comprehensive synthetic schemes, we present
a carbobicyclic scaffold with altered architecture as a promising
chemotype for developing novel nucleoside therapeutics.

## Linked entities

- **Chemicals:** uracil (PubChem CID 1174)
- **Diseases:** influenza (MONDO:0005812)

## Full-text entities

- **Diseases:** HSV (MESH:C536395), influenza (MESH:D007251)
- **Chemicals:** Nucleoside (MESH:D009705), ribose (MESH:D012266), triphosphate (MESH:C005692), Carbobicyclic Nucleoside Analogues (-), uracil (MESH:D014498)
- **Species:** Influenza A virus (no rank) [taxon 11320], Homo sapiens (human, species) [taxon 9606]

## Full text

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## Figures

18 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12990120/full.md

## References

43 references — full list in the complete paper: https://tomesphere.com/paper/PMC12990120/full.md

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Source: https://tomesphere.com/paper/PMC12990120