# Essential Role of CD63 in Maintaining Corneal Epithelial Identity in the Human Limbus

**Authors:** Yuzuru Sasamoto, Kosei Suzuki, Shinri Sato, Catherine A. A. Lee, Gabrielle Martin, Bruce R. Ksander, Markus H. Frank, Natasha Y. Frank

PMC · DOI: 10.1167/iovs.67.3.25 · Investigative Ophthalmology & Visual Science · 2026-03-12

## TL;DR

This study shows that CD63 is crucial for maintaining corneal epithelial identity and function in the human limbus.

## Contribution

The study identifies CD63 as a novel functional component of limbal stem cell biology and corneal epithelial homeostasis.

## Key findings

- CD63 is highly expressed in the human limbus and is required for maintaining corneal epithelial cell identity.
- CD63 knockdown reduces cell proliferation and expression of corneal epithelium-specific genes, including PAX6.
- CD63 co-expresses with ABCB5 and is linked to limbal stem cell markers in murine corneal epithelial cells.

## Abstract

Building on the identification of ABCB5 as a marker of limbal stem cells (LSCs), this study examines CD63, a newly identified molecule co-expressed with ABCB5 in limbal epithelial cells, to define its role in maintaining corneal epithelial cell identity.

RNA sequencing (RNA-seq) was performed on flow cytometry–sorted Abcb5-positive and Abcb5-negative murine corneal epithelial cells. CD63 expression in human corneal tissue was assessed by immunostaining. CD63 was silenced in cultured human limbal epithelial cells using siRNA-mediated knockdown and resulting molecular and cellular changes were analyzed by qRT-PCR, flow cytometry, RNA-seq, Western blotting, and cell proliferation assays.

RNA-seq analysis revealed increased expression of LSC markers, including Krt15, Krt6b, Fgfr1, Gpha2, Ifitm3, Ifitm1, and Cd63, and decreased expression of differentiation-associated markers, such as Krt12, Gja1, and Ovol1 in Abcb5-positive cells. Immunostaining of human corneal tissue demonstrated strong CD63 expression localized to the limbal region. Knockdown of CD63 in cultured human limbal epithelial cells resulted in reduced cell proliferation and significantly decreased expression of corneal epithelium-enriched genes, including KRT12, CLU, ALDH1A1, ALDH3A1, TGFBI, and MYEOV. Notably, CD63 knockdown led to an approximately 50% reduction in expression of PAX6, a key transcriptional regulator of corneal epithelial identity.

CD63 is highly expressed in the human limbus and is required for maintaining cell proliferation and the expression of corneal epithelium-specific proteins, likely through regulation of PAX6. These findings establish CD63 as a functionally important component of limbal stem cell biology and a key contributor to corneal epithelial homeostasis.

## Linked entities

- **Genes:** ABCB5 (ATP binding cassette subfamily B member 5) [NCBI Gene 340273], CD63 (CD63 molecule) [NCBI Gene 967], KRT15 (keratin 15) [NCBI Gene 3866], KRT6B (keratin 6B) [NCBI Gene 3854], FGFR1 (fibroblast growth factor receptor 1) [NCBI Gene 2260], GPHA2 (glycoprotein hormone subunit alpha 2) [NCBI Gene 170589], IFITM3 (interferon induced transmembrane protein 3) [NCBI Gene 10410], IFITM1 (interferon induced transmembrane protein 1) [NCBI Gene 8519], KRT12 (keratin 12) [NCBI Gene 3859], GJA1 (gap junction protein alpha 1) [NCBI Gene 2697], OVOL1 (ovo like transcriptional repressor 1) [NCBI Gene 5017], KRT12 (keratin 12) [NCBI Gene 3859], CLU (clusterin) [NCBI Gene 1191], ALDH1A1 (aldehyde dehydrogenase 1 family member A1) [NCBI Gene 216], ALDH3A1 (aldehyde dehydrogenase 3 family member A1) [NCBI Gene 218], TGFBI (transforming growth factor beta induced) [NCBI Gene 7045], MYEOV (myeloma overexpressed) [NCBI Gene 26579], PAX6 (paired box 6) [NCBI Gene 5080]
- **Proteins:** CD63 (CD63 molecule), PAX6 (paired box 6)
- **Species:** Mus musculus (taxon 10090)

## Full-text entities

- **Genes:** ALDH1A1 (aldehyde dehydrogenase 1 family member A1) [NCBI Gene 216] {aka ALDC, ALDH-E1, ALDH1, ALDH11, HEL-9, HEL-S-53e}, FGFR1 (fibroblast growth factor receptor 1) [NCBI Gene 2260] {aka BFGFR, CD331, CEK, ECCL, FGFBR, FGFR-1}, MYEOV (myeloma overexpressed) [NCBI Gene 26579] {aka OCIM}, TGFBI (transforming growth factor beta induced) [NCBI Gene 7045] {aka BIGH3, CDB1, CDG2, CDGG1, CSD, CSD1}, CD63 (CD63 molecule) [NCBI Gene 967] {aka AD1, HOP-26, ME491, MLA1, OMA81H, Pltgp40}, ALDH3A1 (aldehyde dehydrogenase 3 family member A1) [NCBI Gene 218] {aka ALDH3, ALDHIII}, CLU (clusterin) [NCBI Gene 1191] {aka AAG4, APO-J, APOJ, CLI, CLU1, CLU2}, KRT12 (keratin 12) [NCBI Gene 3859] {aka K12, MECD1}, PAX6 (paired box 6) [NCBI Gene 5080] {aka AN, AN1, AN2, ASGD5, D11S812E, FVH1}, GPHA2 (glycoprotein hormone subunit alpha 2) [NCBI Gene 170589] {aka A2, GPA2, ZSIG51}, KRT6B (keratin 6B) [NCBI Gene 3854] {aka CK-6B, CK6B, K6B, KRTL1, PC2, PC4}, KRT15 (keratin 15) [NCBI Gene 3866] {aka CK15, K15, K1CO}, GJA1 (gap junction protein alpha 1) [NCBI Gene 2697] {aka AVSD3, CMDR, CX43, EKVP, EKVP3, GJAL}, IFITM3 (interferon induced transmembrane protein 3) [NCBI Gene 10410] {aka 1-8U, DSPA2b, IP15}, OVOL1 (ovo like transcriptional repressor 1) [NCBI Gene 5017] {aka HOVO1}, ABCB5 (ATP binding cassette subfamily B member 5) [NCBI Gene 340273] {aka ABCB5alpha, ABCB5beta, EST422562}, IFITM1 (interferon induced transmembrane protein 1) [NCBI Gene 8519] {aka 9-27, CD225, DSPA2a, IFI17, LEU13}
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606]

## Full text

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## Figures

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## References

45 references — full list in the complete paper: https://tomesphere.com/paper/PMC12988681/full.md

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Source: https://tomesphere.com/paper/PMC12988681