# Mutual feedback regulation between Poly(A)-specific ribonuclease (PARN) and cognate microRNAs

**Authors:** Athanasios Kyritsis, Rafailia AA Beta, Diana Scutelnic, Vasiliki Stravokefalou, Valerio Del Vescovo, Zoi V Arsenopoulou, Konstantinos Papikinos, Margherita Grasso, Francesca Fontana, Paraskevi Moutopoulou, Alexandros Tsiporis, Martina Samiotaki, George Panayotou, Michela A Denti, Nikolaos AA Balatsos

PMC · DOI: 10.26508/lsa.202503341 · Life Science Alliance · 2026-03-13

## TL;DR

This study reveals a mutual feedback loop between PARN and specific microRNAs, showing how they regulate each other's expression and affect cell migration.

## Contribution

The paper identifies a novel dynamic feedback mechanism between PARN and miR-29a/miR-1207, mediated by CPSF6.

## Key findings

- PARN regulates the poly(A) lengths of pri-miR-29a and pri-miR-1207.
- miR-29a-3p and miR-1207-5p target PARN mRNA, forming a feedback loop.
- CPSF6 recruits PARN to pri-miRNAs, influencing miRNA levels and cell migration.

## Abstract

PARN regulates poly(A) lengths of pri-miR-29a and pri-miR-1207, which in turn target PARN mRNA. CPSF6 recruits PARN to pri-miRNAs, modulating miRNA levels and cell migration, revealing a dynamic mutual feedback between PARN and specific microRNAs.

The majority of pri-miRNAs acquire a 5′ cap and 3′ poly(A) tail. Mature miRNAs recruit deadenylases that shorten poly(Α) tails triggering target mRNA degradation. Poly(A)-specific ribonuclease (PARN) is a deadenylase that also mediates late steps of noncoding RNA maturation. Herein, we show that PARN affects the expression of a subset of miRNAs in NCI-H520 cells of lung cancer origin, including miR-29a and miR-1207, which are also predicted to target PARN mRNA. PARN associates with pri-miR-29a and pri-miR-1207 regulating their poly(A) lengths. Conversely, miR-29a-3p and miR-1207-5p bind the 3′ UTR of PARN mRNA and regulate its expression. Cleavage and polyadenylation specificity factor 6 (CPSF6) recruits PARN to pri-miRNAs and together they affect primary and mature miR-29a-3p levels. Modulation of PARN, miR-29a-3p, or miR-1207-5p expression affects cell migration. We present a model to describe the dynamic relation between PARN and miR-29a and discuss its biological significance.

## Linked entities

- **Genes:** PARN (poly(A)-specific ribonuclease) [NCBI Gene 5073], CPSF6 (cleavage and polyadenylation specific factor 6) [NCBI Gene 11052]

## Full-text entities

- **Genes:** POTEF (POTE ankyrin domain family member F) [NCBI Gene 728378] {aka A26C1B, POTE2alpha, POTEACTIN}, MIR1207 (microRNA 1207) [NCBI Gene 100302175] {aka MIRN1207, hsa-mir-1207}, MIR29A (microRNA 29a) [NCBI Gene 407021] {aka MIRN29, MIRN29A, hsa-mir-29, hsa-mir-29a, miRNA29A, mir-29a}, CPSF6 (cleavage and polyadenylation specific factor 6) [NCBI Gene 11052] {aka CFIM, CFIM68, CFIM72, HPBRII-4, HPBRII-7}, JUN (Jun proto-oncogene, AP-1 transcription factor subunit) [NCBI Gene 3725] {aka AP-1, AP1, c-Jun, cJUN, p39}, PLAU (plasminogen activator, urokinase) [NCBI Gene 5328] {aka ATF, BDPLT5, QPD, UPA, URK, u-PA}, MIR504 (microRNA 504) [NCBI Gene 574507] {aka MIRN504, hsa-mir-504, mir-504}, MIR21 (microRNA 21) [NCBI Gene 406991] {aka MIRN21, hsa-mir-21, miR-21, miRNA21}, CELF1 (CUGBP Elav-like family member 1) [NCBI Gene 10658] {aka BRUNOL2, CUG-BP, CUGBP, CUGBP1, EDEN-BP, NAB50}, ACTD (Acetabular dysplasia) [NCBI Gene 780896], MIR122 (microRNA 122) [NCBI Gene 406906] {aka MIR122A, MIRN122, MIRN122A, hsa-mir-122, miRNA122, miRNA122A}, TP53 (tumor protein p53) [NCBI Gene 7157] {aka BCC7, BMFS5, LFS1, P53, TRP53}, DROSHA (drosha ribonuclease III) [NCBI Gene 29102] {aka ETOHI2, HSA242976, RANSE3L, RN3, RNASE3L, RNASEN}, PVT1 (Pvt1 oncogene) [NCBI Gene 5820] {aka LINC00079, MIR1204HG, NCRNA00079, TP53LC09, onco-lncRNA-100}, RNASE1 (ribonuclease A family member 1, pancreatic) [NCBI Gene 6035] {aka RAC1, RIB1, RNS1}, F2R (coagulation factor II thrombin receptor) [NCBI Gene 2149] {aka CF2R, HTR, PAR-1, PAR1, TR}, FOS (Fos proto-oncogene, AP-1 transcription factor subunit) [NCBI Gene 2353] {aka AP-1, C-FOS, p55}, TNF (tumor necrosis factor) [NCBI Gene 7124] {aka DIF, IMD127, TNF-alpha, TNFA, TNFSF2, TNLG1F}, CSTF1 (cleavage stimulation factor subunit 1) [NCBI Gene 1477] {aka CstF-50, CstFp50}, MALAT1 (metastasis associated lung adenocarcinoma transcript 1) [NCBI Gene 378938] {aka HCN, LINC00047, NCRNA00047, NEAT2, PRO2853, miPEP-52}, MIR451A (microRNA 451a) [NCBI Gene 574411] {aka MIR451, MIRN451, hsa-mir-451, hsa-mir-451a, mir-451a}, ZFP36 (ZFP36 zinc finger CCCH-type) [NCBI Gene 7538] {aka G0S24, GOS24, NUP475, RNF162A, TIS11, TTP}, PARN (poly(A)-specific ribonuclease) [NCBI Gene 5073] {aka DAN, DKCB6, PFBMFT4}, MSX2 (msh homeobox 2) [NCBI Gene 4488] {aka CRS2, FPP, HOX8, MSH, PFM, PFM1}, AGO2 (argonaute RISC catalytic component 2) [NCBI Gene 27161] {aka CASC7, EIF2C2, LESKRES, LINC00980, PPD, Q10}, NUDT21 (nudix hydrolase 21) [NCBI Gene 11051] {aka CFIM25, CPSF5}, DICER1 (dicer 1, ribonuclease III) [NCBI Gene 23405] {aka DCR1, Dicer, Dicer1e, GLOW, HERNA, K12H4.8-LIKE}, KHSRP (KH-type splicing regulatory protein) [NCBI Gene 8570] {aka FBP2, FUBP2, KSRP, p75}, TDO2 (tryptophan 2,3-dioxygenase) [NCBI Gene 6999] {aka HYPTRP, TDO, TO, TPH2, TRPO}, EIF4E (eukaryotic translation initiation factor 4E) [NCBI Gene 1977] {aka AUTS19, CBP, EIF4E1, EIF4EL1, EIF4F, eIF-4E}, TENT4B (terminal nucleotidyltransferase 4B) [NCBI Gene 64282] {aka PAPD5, TRF4-2, TUT3}
- **Diseases:** tumorigenesis (MESH:D063646), lung cancer (MESH:D008175), metastasis (MESH:D009362), nasopharyngeal carcinoma (MESH:D000077274), colorectal cancer (MESH:D015179), dyskeratosis congenita (MESH:D019871), hepatocellular carcinoma (MESH:D006528), NSCLC (MESH:D002289), cancer (MESH:D009369), Hoyeraal-Hreidarsson syndrome (MESH:C536068), mycoplasma infection (MESH:D009175), pulmonary fibrosis (MESH:D011658), bone-marrow failure (MESH:D000080983), breast cancer (MESH:D001943)
- **Chemicals:** chloroform (MESH:D002725), KCl (MESH:D011189), glutamine (MESH:D005973), acid (MESH:D000143), Triton X-100 (MESH:D017830), methionine (MESH:D008715), Nonidet P-40 (MESH:C010615), Sepharose (MESH:D012685), IP150 buffer (-), poly (MESH:D011061), isoamyl alcohol (MESH:C029683), B (MESH:D001895), Hepes (MESH:D006531), ACN (MESH:C084683), TRIzol (MESH:C411644), silver (MESH:D012834), A (MESH:D001151), SDS (MESH:D012967), phenol (MESH:D019800), asparagine (MESH:D001216), ammonium bicarbonate (MESH:C027043), acetonitrile (MESH:C032159), formaldehyde (MESH:D005557), formic acid (MESH:C030544), Puromycin (MESH:D011691), ammonium acetate (MESH:C018824), DEPC (MESH:D004047), water (MESH:D014867), DTT (MESH:D004229), tetracycline (MESH:D013752), Act D (MESH:D003609), CO2 (MESH:D002245), LNA (MESH:C477371), ATP (MESH:D000255), oligonucleotides (MESH:D009841)
- **Species:** Moloney murine leukemia virus (no rank) [taxon 11801], Danio rerio (leopard danio, species) [taxon 7955], Mus musculus (house mouse, species) [taxon 10090], Drosophila melanogaster (fruit fly, species) [taxon 7227], Homo sapiens (human, species) [taxon 9606]
- **Mutations:** glutamate to alanine, G2505C, E30A, C) for 1, C with 50
- **Cell lines:** H520 — Homo sapiens (Human), Lung squamous cell carcinoma, Cancer cell line (CVCL_1566), HeLa — Homo sapiens (Human), Human papillomavirus-related endocervical adenocarcinoma, Cancer cell line (CVCL_0030), NM — Bos taurus (Bovine), Finite cell line (CVCL_3074), -Rex — Rattus norvegicus (Rat), Rat chondrosarcoma, Cancer cell line (CVCL_6D58), SHC016 — Homo sapiens (Human), Chronic myelogenous leukemia, BCR-ABL1 positive, Cancer cell line (CVCL_TK99), MDA-MB-231 — Homo sapiens (Human), Breast adenocarcinoma, Cancer cell line (CVCL_0062), S2 — Drosophila melanogaster (Fruit fly), Spontaneously immortalized cell line (CVCL_Z232)

## Full text

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## Figures

9 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12988311/full.md

## References

86 references — full list in the complete paper: https://tomesphere.com/paper/PMC12988311/full.md

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Source: https://tomesphere.com/paper/PMC12988311