# Effect of Camelina sativa seeds on rumen microbiota and fermentation in dairy sheep

**Authors:** Christos Christodoulou, Alexandros Mavrommatis, Marco Severgnini, Paola Cremonesi, Bianca Castiglioni, Panagiota Kyriakaki, Rafaela Andreaki, Basiliki Kotsampasi, Eleni Tsiplakou

PMC · DOI: 10.1093/jas/skag033 · Journal of Animal Science · 2026-02-13

## TL;DR

This study shows that adding Camelina sativa seeds to dairy sheep diets changes the rumen microbes and fermentation, potentially offering a sustainable feed option.

## Contribution

The study reveals specific microbial shifts and fermentation changes in sheep due to varying levels of Camelina sativa seed inclusion.

## Key findings

- Higher Camelina inclusion increased acetic and propionic acid concentrations in rumen fluid.
- Camelina reduced biodiversity in rumen fluid and altered the abundance of key microbial taxa.
- Lower Camelina levels enriched fibrolytic bacteria, while higher levels favored amylolytic and propionate-associated microbes.

## Abstract

This study investigated the effect of three levels of Camelina sativa seeds on ewes’ diet on rumen microbiota using 16S rRNA gene amplicon sequencing and biochemical assays, focusing on rumen fermentation parameters and carbohydrates, proteins, and fats metabolism. Forty-eight dairy ewes were assigned to four homogeneous groups based on the inclusion level of C. sativa seeds in the diet (0, 28, 51.3, and 74.6 g/kg DM; Control, CS6, CS11, and CS16, respectively). Rumen digesta were collected on the 60th day of the trial using an esophageal tube. Rumen fluid was analyzed for volatile fatty acids (VFAs) concentration and rumen enzymatic activity. In addition, rumen microbiota was characterized in both fluid and solid fractions. The acetic and propionic acid concentrations were higher (P < 0.001) in CS11 compared with Control and CS6. Iso-butyric, butyric, iso-valeric, valeric acid, and total VFAs concentrations were higher (P < 0.05) in CS11 than in Control. The acetic: propionic ratio was higher (P = 0.003) in Control than in CS11 and CS16. Amylase activity was lower (P < 0.001) in CS6. In rumen fluid, CS11 and CS16 had a lower ­biodiversity than the Control, while composition also differed (P ≤ 0.05). Regarding the most notable results of the taxa relative abundance, as compared with CS11 and CS16, Ruminobacter and Succinimonas relative abundances were lower (P < 0.05) in CS6, while Fibrobacter, Methanobrevibacter, Saccharofermentans, and Lachnospiraceae ND3007 group relative abundances were higher (P < 0.05). Ruminococcus was higher (P < 0.001) in CS6 than in Control. Fibrobacter was higher (P < 0.05) in the Control than in CS16. Butyrivibrio and Pseudobutyrivibrio were higher (P < 0.001) in CS11 compared with Control and CS6. Selenomonas ­relative abundance was higher (P < 0.001) in CS16 than in Control and CS6. Higher inclusion levels were associated with reduced relative abundance of fibrolytic taxa and increased abundance of microbial groups linked to carbohydrate fermentation and ­fatty acid biohydrogenation, with responses differing between rumen fluid and solid fractions. The lower-fat inclusion of C. sativa seeds could be associated with a relative enrichment of fibrolytic bacteria, potentially linked to greater phenolic bioavailabi­lity, whereas higher inclusion levels are associated with shifts toward amylolytic and propionate-associated taxa.

This study used next-generation sequencing to investigate how three different levels of Camelina sativa seed inclusion affect the rumen fermentation parameters and rumen microbiota of dairy ewes. Results showed distinct microbial shifts in both rumen fluid and solid fractions, including changes in fiber-degrading and fermentation-related microbes. These findings suggest that Camelina seeds can modulate the rumen microbiota and may offer a sustainable alternative to conventional protein sources in ruminant diets.

## Linked entities

- **Species:** Camelina sativa (taxon 90675), Ovis aries (taxon 9940)

## Full-text entities

- **Chemicals:** carbohydrate (MESH:D002241), acetic (MESH:D019342), Iso-butyric, butyric, iso-valeric, valeric acid (-), VFAs (MESH:D005232), fatty acid (MESH:D005227), propionic acid (MESH:C029658), propionate (MESH:D011422)
- **Species:** Ruminococcus (genus) [taxon 1263], Pseudobutyrivibrio (genus) [taxon 46205], Ovis aries (domestic sheep, species) [taxon 9940], Lachnospiraceae (family) [taxon 186803], Methanobrevibacter (genus) [taxon 2172], Succinimonas (genus) [taxon 83768], Ruminobacter (genus) [taxon 866], Camelina sativa (false flax, species) [taxon 90675], Fibrobacter (genus) [taxon 832], Saccharofermentans (genus) [taxon 1200657], Bacteria Latreille et al. 1825 (Bacteria stick insect, genus) [taxon 629395], Butyrivibrio (genus) [taxon 830]

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## References

51 references — full list in the complete paper: https://tomesphere.com/paper/PMC12986772/full.md

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Source: https://tomesphere.com/paper/PMC12986772