# Synthesis, Characterization, and Bioactivity Investigation of Novel Benzimidazole Derivatives as Potential Antibacterial and Antifungal Agents

**Authors:** Said Alghawi, Nallusamy Sivakumar, Sedky H. A. Hassan, Raid J. Abdel-Jalil

PMC · DOI: 10.3390/molecules31050844 · 2026-03-03

## TL;DR

This study creates and tests new benzimidazole compounds that show promise as antibacterial and antifungal agents.

## Contribution

The paper introduces novel benzimidazole derivatives with demonstrated antimicrobial activity and a potential bactericidal mechanism.

## Key findings

- Compound 6h showed the best antibacterial activity with an MIC of 5.0 µg/mL.
- SEM analysis revealed that 6h caused cell deformation and membrane disruption in bacteria.
- Most compounds displayed moderate to good antimicrobial activity against tested pathogens.

## Abstract

A series of benzimidazole derivatives 6a–j was designed and synthesized via the condensation of the corresponding o-phenylenediamine intermediates with formic acid. Antibacterial activity was evaluated in vitro using the agar well diffusion method against Staphylococcus aureus, Bacillus cereus, Escherichia coli, and Klebsiella pneumoniae, with nitrofurantoin (300 µg/mL) as the positive control. Antifungal screening was performed against Aspergillus flavus, Penicillium duclauxii, and P. italicum at 20 and 50 µg/mL, with Amphotericin B as the reference drug at the same concentrations. Most compounds exhibited moderate to good antimicrobial activity. MIC determination identified 6h as the most active antibacterial agent (MIC = 5.0 µg/mL). The SEM analysis of bacteria treated with 6h revealed marked morphological damage, including cell deformation and membrane disruption, supporting a bactericidal mode of action. Collectively, these results highlight benzimidazole derivatives as promising scaffolds for the development of broad-spectrum antibacterial and antifungal agents.

## Linked entities

- **Chemicals:** formic acid (PubChem CID 284), nitrofurantoin (PubChem CID 6604200), Amphotericin B (PubChem CID 1972)
- **Species:** Staphylococcus aureus (taxon 1280), Bacillus cereus (taxon 1396), Escherichia coli (taxon 562), Klebsiella pneumoniae (taxon 573), Aspergillus flavus (taxon 5059), Penicillium italicum (taxon 40296)

## Full-text entities

- **Chemicals:** agar (MESH:D000362), Amphotericin B (MESH:D000666), o-phenylenediamine (MESH:C034193), Benzimidazole (MESH:C031000), formic acid (MESH:C030544), nitrofurantoin (MESH:D009582)
- **Species:** Bacillus cereus (species) [taxon 1396], Staphylococcus aureus (species) [taxon 1280], Aspergillus flavus (species) [taxon 5059], Talaromyces duclauxii (species) [taxon 29842], Escherichia coli (E. coli, species) [taxon 562], Klebsiella pneumoniae (species) [taxon 573]

## Figures

9 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12986465/full.md

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Source: https://tomesphere.com/paper/PMC12986465